Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 AC104581.1-202ENST00000635932 2618 ntBASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 AL049812.1-201ENST00000432563 2267 ntBASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMARCAL1Q9NZC9 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 TERF1P5-201ENST00000477545 1207 ntBASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 AL591742.1-201ENST00000604433 565 ntBASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 AL031963.3-201ENST00000606441 850 ntBASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 AC010536.3-201ENST00000620306 533 ntBASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMARCAL1Q9NZC9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 AC137761.2-201ENST00000561729 223 ntBASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 AC145350.3-201ENST00000569033 163 ntBASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 KRT16P6-202ENST00000425692 1426 ntBASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCAL1Q9NZC9 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 CROCCP3-202ENST00000420820 1947 ntBASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCAL1Q9NZC9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms