Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 FITM1-202ENST00000559294 800 ntBASIC20.35■□□□□ 0.85
HPS4Q9NQG7 C1QL1P1-201ENST00000568105 661 ntBASIC20.35■□□□□ 0.85
HPS4Q9NQG7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 AP006587.1-201ENST00000534129 1502 ntBASIC20.35■□□□□ 0.85
HPS4Q9NQG7 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
HPS4Q9NQG7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 AC116351.2-201ENST00000606540 1585 ntBASIC20.34■□□□□ 0.85
HPS4Q9NQG7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 AL445228.2-201ENST00000605589 952 ntBASIC20.34■□□□□ 0.85
HPS4Q9NQG7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 AC005363.2-201ENST00000618631 242 ntBASIC20.34■□□□□ 0.85
HPS4Q9NQG7 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS4Q9NQG7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 AC007225.1-201ENST00000566331 1836 ntBASIC20.33■□□□□ 0.85
HPS4Q9NQG7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 AC010947.1-201ENST00000623454 693 ntBASIC20.33■□□□□ 0.85
HPS4Q9NQG7 AC092865.7-201ENST00000641832 219 ntBASIC20.33■□□□□ 0.85
HPS4Q9NQG7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.85
HPS4Q9NQG7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HPS4Q9NQG7 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HPS4Q9NQG7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.33■□□□□ 0.84
HPS4Q9NQG7 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HPS4Q9NQG7 LINC01568-207ENST00000641790 1380 ntBASIC20.33■□□□□ 0.84
HPS4Q9NQG7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 AC005521.1-201ENST00000393351 872 ntBASIC20.32■□□□□ 0.84
HPS4Q9NQG7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 TFP1-202ENST00000475455 1573 ntBASIC20.32■□□□□ 0.84
HPS4Q9NQG7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
HPS4Q9NQG7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 MESTP1-201ENST00000404287 994 ntBASIC20.31■□□□□ 0.84
HPS4Q9NQG7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 NAPSB-206ENST00000562112 1266 ntBASIC20.31■□□□□ 0.84
HPS4Q9NQG7 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS4Q9NQG7 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms