Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX3-1Q99801 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX3-1Q99801 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.12■□□□□ 0.33
NKX3-1Q99801 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 STX7-201ENST00000367937 1090 ntTSL 5 BASIC17.11■□□□□ 0.33
NKX3-1Q99801 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
NKX3-1Q99801 AC090192.1-201ENST00000517740 490 ntBASIC17.11■□□□□ 0.33
NKX3-1Q99801 SPI1-203ENST00000533030 661 ntTSL 2 BASIC17.11■□□□□ 0.33
NKX3-1Q99801 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 Z82202.1-201ENST00000623446 1880 ntBASIC17.11■□□□□ 0.33
NKX3-1Q99801 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.11■□□□□ 0.33
NKX3-1Q99801 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
NKX3-1Q99801 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX3-1Q99801 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.11■□□□□ 0.33
NKX3-1Q99801 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX3-1Q99801 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.1■□□□□ 0.33
NKX3-1Q99801 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX3-1Q99801 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX3-1Q99801 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX3-1Q99801 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.1■□□□□ 0.33
NKX3-1Q99801 AL032819.2-201ENST00000624543 2162 ntBASIC17.1■□□□□ 0.33
NKX3-1Q99801 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
NKX3-1Q99801 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.1■□□□□ 0.33
NKX3-1Q99801 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX3-1Q99801 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.09■□□□□ 0.33
NKX3-1Q99801 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
NKX3-1Q99801 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX3-1Q99801 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC17.09■□□□□ 0.33
NKX3-1Q99801 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 PGM5P4-201ENST00000421970 445 ntBASIC17.09■□□□□ 0.33
NKX3-1Q99801 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
NKX3-1Q99801 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC17.09■□□□□ 0.33
NKX3-1Q99801 AC011767.1-201ENST00000617410 1153 ntBASIC17.09■□□□□ 0.33
NKX3-1Q99801 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.09■□□□□ 0.33
NKX3-1Q99801 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
NKX3-1Q99801 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.09■□□□□ 0.33
NKX3-1Q99801 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX3-1Q99801 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
NKX3-1Q99801 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
NKX3-1Q99801 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
NKX3-1Q99801 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
NKX3-1Q99801 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
NKX3-1Q99801 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.08■□□□□ 0.33
NKX3-1Q99801 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
NKX3-1Q99801 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NKX3-1Q99801 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NKX3-1Q99801 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NKX3-1Q99801 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
NKX3-1Q99801 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NKX3-1Q99801 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
NKX3-1Q99801 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms