Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.7■□□□□ 0.74
VPS39Q96JC1 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS39Q96JC1 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS39Q96JC1 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS39Q96JC1 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
VPS39Q96JC1 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS39Q96JC1 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
VPS39Q96JC1 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
VPS39Q96JC1 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 AC098818.2-201ENST00000564925 2320 ntBASIC19.69■□□□□ 0.74
VPS39Q96JC1 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS39Q96JC1 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS39Q96JC1 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS39Q96JC1 AC133552.2-202ENST00000575694 574 ntBASIC19.69■□□□□ 0.74
VPS39Q96JC1 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS39Q96JC1 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS39Q96JC1 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
VPS39Q96JC1 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS39Q96JC1 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS39Q96JC1 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS39Q96JC1 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS39Q96JC1 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS39Q96JC1 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
VPS39Q96JC1 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS39Q96JC1 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 LSM12P1-201ENST00000411836 588 ntBASIC19.68■□□□□ 0.74
VPS39Q96JC1 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.68■□□□□ 0.74
VPS39Q96JC1 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
VPS39Q96JC1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS39Q96JC1 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
VPS39Q96JC1 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS39Q96JC1 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS39Q96JC1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS39Q96JC1 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS39Q96JC1 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS39Q96JC1 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
VPS39Q96JC1 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS39Q96JC1 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS39Q96JC1 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS39Q96JC1 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS39Q96JC1 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS39Q96JC1 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.67■□□□□ 0.74
VPS39Q96JC1 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS39Q96JC1 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS39Q96JC1 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
VPS39Q96JC1 AC080038.1-201ENST00000611274 1154 ntBASIC19.67■□□□□ 0.74
VPS39Q96JC1 AC092437.1-201ENST00000624794 1048 ntBASIC19.67■□□□□ 0.74
VPS39Q96JC1 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS39Q96JC1 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS39Q96JC1 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS39Q96JC1 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS39Q96JC1 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS39Q96JC1 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS39Q96JC1 Z82202.1-201ENST00000623446 1880 ntBASIC19.67■□□□□ 0.74
VPS39Q96JC1 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS39Q96JC1 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
VPS39Q96JC1 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
VPS39Q96JC1 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
VPS39Q96JC1 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS39Q96JC1 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
VPS39Q96JC1 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS39Q96JC1 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS39Q96JC1 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms