Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 AC012618.2-201ENST00000428058 849 ntBASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 PTBP1P-201ENST00000554374 1601 ntBASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 KRT8P17-201ENST00000453110 1448 ntBASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 DPP3P2-201ENST00000416030 1696 ntBASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 AC233702.5-201ENST00000584107 538 ntBASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLIP3Q96DZ5 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP3Q96DZ5 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 NBPF21P-201ENST00000425093 1451 ntBASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 LETM1P2-201ENST00000597330 2178 ntBASIC18.91■□□□□ 0.62
CLIP3Q96DZ5 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP3Q96DZ5 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms