Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF540Q8NDQ6 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 AC004854.2-201ENST00000608450 1441 ntBASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 AC116050.2-201ENST00000612102 1779 ntBASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.17■□□□□ 0.5
ZNF540Q8NDQ6 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF540Q8NDQ6 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 LINC01465-201ENST00000408887 1940 ntBASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 AC008175.2-201ENST00000612840 297 ntBASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 AL032819.2-201ENST00000624543 2162 ntBASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ZNF540Q8NDQ6 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
ZNF540Q8NDQ6 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.14■□□□□ 0.5
ZNF540Q8NDQ6 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
ZNF540Q8NDQ6 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
ZNF540Q8NDQ6 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
ZNF540Q8NDQ6 AL138781.2-201ENST00000617896 1843 ntBASIC18.14■□□□□ 0.5
ZNF540Q8NDQ6 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms