Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.25■□□□□ 0.51
DEPDC4Q8N2C3 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 HLA-L-209ENST00000420110 1011 ntBASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 AC010536.3-201ENST00000620306 533 ntBASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DEPDC4Q8N2C3 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 MIR663A-201ENST00000385250 93 ntBASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 DUX4L16-201ENST00000555130 1264 ntBASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.23■□□□□ 0.51
DEPDC4Q8N2C3 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 AC093503.3-201ENST00000624917 2352 ntBASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 GPX1P1-201ENST00000388829 606 ntBASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 AC005181.1-201ENST00000604782 1256 ntBASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 AC013268.1-206ENST00000638368 961 ntBASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 AC112229.1-201ENST00000639295 961 ntBASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.22■□□□□ 0.51
DEPDC4Q8N2C3 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
DEPDC4Q8N2C3 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.21■□□□□ 0.51
DEPDC4Q8N2C3 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
DEPDC4Q8N2C3 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
DEPDC4Q8N2C3 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.21■□□□□ 0.51
DEPDC4Q8N2C3 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
DEPDC4Q8N2C3 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
DEPDC4Q8N2C3 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
DEPDC4Q8N2C3 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
DEPDC4Q8N2C3 CROCCP5-201ENST00000436658 830 ntBASIC18.21■□□□□ 0.51
DEPDC4Q8N2C3 TERF1P5-201ENST00000477545 1207 ntBASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms