Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
USF3Q68DE3 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
USF3Q68DE3 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USF3Q68DE3 AC113347.1-201ENST00000413321 391 ntBASIC16.9■□□□□ 0.3
USF3Q68DE3 AC116562.2-201ENST00000507042 360 ntBASIC16.9■□□□□ 0.3
USF3Q68DE3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.9■□□□□ 0.3
USF3Q68DE3 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.9■□□□□ 0.3
USF3Q68DE3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.9■□□□□ 0.3
USF3Q68DE3 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
USF3Q68DE3 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.9■□□□□ 0.3
USF3Q68DE3 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF3Q68DE3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF3Q68DE3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
USF3Q68DE3 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF3Q68DE3 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.9■□□□□ 0.3
USF3Q68DE3 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.9■□□□□ 0.3
USF3Q68DE3 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF3Q68DE3 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
USF3Q68DE3 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USF3Q68DE3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
USF3Q68DE3 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC16.9■□□□□ 0.3
USF3Q68DE3 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF3Q68DE3 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.9■□□□□ 0.3
USF3Q68DE3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
USF3Q68DE3 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16.9■□□□□ 0.3
USF3Q68DE3 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USF3Q68DE3 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USF3Q68DE3 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.9■□□□□ 0.3
USF3Q68DE3 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
USF3Q68DE3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
USF3Q68DE3 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
USF3Q68DE3 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USF3Q68DE3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
USF3Q68DE3 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
USF3Q68DE3 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USF3Q68DE3 AP002982.1-201ENST00000492365 877 ntBASIC16.89■□□□□ 0.29
USF3Q68DE3 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.89■□□□□ 0.29
USF3Q68DE3 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USF3Q68DE3 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.89■□□□□ 0.29
USF3Q68DE3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USF3Q68DE3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USF3Q68DE3 AC112907.3-201ENST00000577781 2400 ntBASIC16.89■□□□□ 0.29
USF3Q68DE3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC16.89■□□□□ 0.29
USF3Q68DE3 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USF3Q68DE3 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USF3Q68DE3 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
USF3Q68DE3 C2orf69P3-201ENST00000565542 1120 ntBASIC16.89■□□□□ 0.29
USF3Q68DE3 AL049597.2-201ENST00000565575 961 ntBASIC16.89■□□□□ 0.29
USF3Q68DE3 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
USF3Q68DE3 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USF3Q68DE3 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
USF3Q68DE3 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
USF3Q68DE3 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
USF3Q68DE3 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
USF3Q68DE3 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USF3Q68DE3 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
USF3Q68DE3 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
USF3Q68DE3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.88■□□□□ 0.29
USF3Q68DE3 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USF3Q68DE3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USF3Q68DE3 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
USF3Q68DE3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
USF3Q68DE3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.88■□□□□ 0.29
USF3Q68DE3 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
USF3Q68DE3 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.88■□□□□ 0.29
USF3Q68DE3 CYP2D8P-201ENST00000433633 1490 ntBASIC16.88■□□□□ 0.29
USF3Q68DE3 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USF3Q68DE3 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USF3Q68DE3 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
USF3Q68DE3 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC16.88■□□□□ 0.29
USF3Q68DE3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USF3Q68DE3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
USF3Q68DE3 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.88■□□□□ 0.29
USF3Q68DE3 ARMC10P1-201ENST00000313754 855 ntBASIC16.88■□□□□ 0.29
USF3Q68DE3 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
USF3Q68DE3 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.88■□□□□ 0.29
USF3Q68DE3 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.88■□□□□ 0.29
USF3Q68DE3 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.88■□□□□ 0.29
USF3Q68DE3 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.87■□□□□ 0.29
USF3Q68DE3 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
USF3Q68DE3 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
USF3Q68DE3 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16.87■□□□□ 0.29
USF3Q68DE3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USF3Q68DE3 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.87■□□□□ 0.29
USF3Q68DE3 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC16.87■□□□□ 0.29
USF3Q68DE3 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
USF3Q68DE3 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
USF3Q68DE3 AC007225.1-201ENST00000566331 1836 ntBASIC16.87■□□□□ 0.29
USF3Q68DE3 AC005521.1-201ENST00000393351 872 ntBASIC16.87■□□□□ 0.29
USF3Q68DE3 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.87■□□□□ 0.29
USF3Q68DE3 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
USF3Q68DE3 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.87■□□□□ 0.29
USF3Q68DE3 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.87■□□□□ 0.29
USF3Q68DE3 GABARAPL3-202ENST00000624044 1851 ntBASIC16.87■□□□□ 0.29
USF3Q68DE3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
USF3Q68DE3 KRT18P22-201ENST00000402024 1347 ntBASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms