Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL28A1Q2UY09 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.89■□□□□ 0.61
COL28A1Q2UY09 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 AL031133.1-201ENST00000406807 723 ntBASIC18.88■□□□□ 0.61
COL28A1Q2UY09 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 AC093458.2-201ENST00000623150 629 ntBASIC18.88■□□□□ 0.61
COL28A1Q2UY09 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL28A1Q2UY09 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 AC116562.2-201ENST00000507042 360 ntBASIC18.87■□□□□ 0.61
COL28A1Q2UY09 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 AL121829.2-201ENST00000620908 328 ntBASIC18.87■□□□□ 0.61
COL28A1Q2UY09 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL28A1Q2UY09 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 BX664615.1-201ENST00000443558 458 ntBASIC18.86■□□□□ 0.61
COL28A1Q2UY09 ECEL1P2-202ENST00000465689 757 ntBASIC18.86■□□□□ 0.61
COL28A1Q2UY09 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms