Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.06■□□□□ 0.96
VCPP55072 AFG3L1P-217ENST00000557444 2447 ntBASIC21.06■□□□□ 0.96
VCPP55072 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VCPP55072 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VCPP55072 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VCPP55072 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.06■□□□□ 0.96
VCPP55072 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCPP55072 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VCPP55072 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCPP55072 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCPP55072 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VCPP55072 AC005521.1-201ENST00000393351 872 ntBASIC21.06■□□□□ 0.96
VCPP55072 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.06■□□□□ 0.96
VCPP55072 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.06■□□□□ 0.96
VCPP55072 AC005363.2-201ENST00000618631 242 ntBASIC21.06■□□□□ 0.96
VCPP55072 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
VCPP55072 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VCPP55072 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCPP55072 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
VCPP55072 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
VCPP55072 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
VCPP55072 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
VCPP55072 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 AP003071.4-201ENST00000562276 1284 ntBASIC21.05■□□□□ 0.96
VCPP55072 AL356652.1-201ENST00000615962 565 ntBASIC21.05■□□□□ 0.96
VCPP55072 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCPP55072 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
VCPP55072 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
VCPP55072 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
VCPP55072 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.04■□□□□ 0.96
VCPP55072 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
VCPP55072 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.04■□□□□ 0.96
VCPP55072 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.04■□□□□ 0.96
VCPP55072 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.04■□□□□ 0.96
VCPP55072 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
VCPP55072 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCPP55072 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
VCPP55072 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.03■□□□□ 0.96
VCPP55072 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.03■□□□□ 0.96
VCPP55072 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.03■□□□□ 0.96
VCPP55072 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.03■□□□□ 0.96
VCPP55072 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
VCPP55072 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.03■□□□□ 0.96
VCPP55072 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
VCPP55072 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
VCPP55072 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCPP55072 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.03■□□□□ 0.96
VCPP55072 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCPP55072 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.02■□□□□ 0.96
VCPP55072 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCPP55072 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCPP55072 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
VCPP55072 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.02■□□□□ 0.96
VCPP55072 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCPP55072 KRT18P57-201ENST00000443599 1254 ntBASIC21.02■□□□□ 0.96
VCPP55072 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.02■□□□□ 0.96
VCPP55072 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.02■□□□□ 0.96
VCPP55072 AC145285.6-201ENST00000604632 637 ntBASIC21.02■□□□□ 0.96
VCPP55072 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.02■□□□□ 0.96
VCPP55072 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.02■□□□□ 0.96
VCPP55072 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VCPP55072 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
VCPP55072 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VCPP55072 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCPP55072 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms