Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC23.79■■□□□ 1.4
COL4A5P29400 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A5P29400 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC23.79■■□□□ 1.4
COL4A5P29400 PTK2-216ENST00000519881 863 ntTSL 3 BASIC23.79■■□□□ 1.4
COL4A5P29400 ETFA-216ENST00000560726 942 ntTSL 3 BASIC23.79■■□□□ 1.4
COL4A5P29400 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23.79■■□□□ 1.4
COL4A5P29400 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A5P29400 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A5P29400 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A5P29400 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A5P29400 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC23.78■■□□□ 1.4
COL4A5P29400 AC069148.1-201ENST00000608741 768 ntBASIC23.78■■□□□ 1.4
COL4A5P29400 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.78■■□□□ 1.4
COL4A5P29400 FEM1AP4-201ENST00000443167 1987 ntBASIC23.78■■□□□ 1.4
COL4A5P29400 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.78■■□□□ 1.4
COL4A5P29400 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.78■■□□□ 1.4
COL4A5P29400 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A5P29400 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
COL4A5P29400 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A5P29400 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A5P29400 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC23.77■■□□□ 1.4
COL4A5P29400 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC23.77■■□□□ 1.4
COL4A5P29400 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC23.77■■□□□ 1.4
COL4A5P29400 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC23.77■■□□□ 1.4
COL4A5P29400 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC23.77■■□□□ 1.4
COL4A5P29400 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC23.77■■□□□ 1.4
COL4A5P29400 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A5P29400 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A5P29400 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.77■■□□□ 1.4
COL4A5P29400 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A5P29400 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A5P29400 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC23.76■■□□□ 1.39
COL4A5P29400 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A5P29400 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC23.76■■□□□ 1.39
COL4A5P29400 DFFB-212ENST00000625756 649 ntTSL 5 BASIC23.76■■□□□ 1.39
COL4A5P29400 CLN6-214ENST00000636314 442 ntTSL 3 BASIC23.76■■□□□ 1.39
COL4A5P29400 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A5P29400 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A5P29400 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A5P29400 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
COL4A5P29400 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A5P29400 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A5P29400 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A5P29400 FP700111.2-201ENST00000619190 1892 ntBASIC23.76■■□□□ 1.39
COL4A5P29400 AL353719.1-201ENST00000566847 864 ntBASIC23.76■■□□□ 1.39
COL4A5P29400 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A5P29400 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
COL4A5P29400 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC23.75■■□□□ 1.39
COL4A5P29400 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
COL4A5P29400 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A5P29400 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A5P29400 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A5P29400 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
COL4A5P29400 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A5P29400 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A5P29400 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A5P29400 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC23.75■■□□□ 1.39
COL4A5P29400 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC23.75■■□□□ 1.39
COL4A5P29400 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC23.75■■□□□ 1.39
COL4A5P29400 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC23.75■■□□□ 1.39
COL4A5P29400 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC23.75■■□□□ 1.39
COL4A5P29400 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
COL4A5P29400 VPS72-207ENST00000640458 689 ntTSL 5 BASIC23.75■■□□□ 1.39
COL4A5P29400 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A5P29400 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A5P29400 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A5P29400 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A5P29400 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A5P29400 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC23.74■■□□□ 1.39
COL4A5P29400 HOMER2P1-201ENST00000455653 964 ntBASIC23.74■■□□□ 1.39
COL4A5P29400 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC23.74■■□□□ 1.39
COL4A5P29400 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC23.74■■□□□ 1.39
COL4A5P29400 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A5P29400 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A5P29400 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A5P29400 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A5P29400 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A5P29400 TMEM179-206ENST00000616017 1645 ntBASIC23.74■■□□□ 1.39
COL4A5P29400 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC23.74■■□□□ 1.39
COL4A5P29400 AF106564.1-201ENST00000607058 2553 ntBASIC23.74■■□□□ 1.39
COL4A5P29400 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A5P29400 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC23.74■■□□□ 1.39
COL4A5P29400 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC23.74■■□□□ 1.39
COL4A5P29400 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC23.74■■□□□ 1.39
COL4A5P29400 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC23.74■■□□□ 1.39
COL4A5P29400 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A5P29400 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
COL4A5P29400 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC23.73■■□□□ 1.39
COL4A5P29400 TSPY21P-201ENST00000433481 731 ntBASIC23.73■■□□□ 1.39
COL4A5P29400 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC23.73■■□□□ 1.39
COL4A5P29400 TSPY23P-201ENST00000440136 739 ntBASIC23.73■■□□□ 1.39
COL4A5P29400 TSPY17P-201ENST00000450329 467 ntBASIC23.73■■□□□ 1.39
COL4A5P29400 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC23.73■■□□□ 1.39
COL4A5P29400 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
COL4A5P29400 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A5P29400 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
COL4A5P29400 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A5P29400 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
COL4A5P29400 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC23.73■■□□□ 1.39
COL4A5P29400 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms