Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC14.97□□□□□ -0.01
HLA-DMBP28068 KRT17P1-201ENST00000399211 1546 ntBASIC14.97□□□□□ -0.01
HLA-DMBP28068 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-DMBP28068 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-DMBP28068 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-DMBP28068 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 STK25-204ENST00000405585 1643 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-DMBP28068 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-DMBP28068 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-DMBP28068 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-DMBP28068 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-DMBP28068 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-DMBP28068 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 BET1L-204ENST00000410108 637 ntTSL 3 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-DMBP28068 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 AC083906.2-201ENST00000511578 360 ntBASIC14.96□□□□□ -0.01
HLA-DMBP28068 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC14.96□□□□□ -0.01
HLA-DMBP28068 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-DMBP28068 AL050303.2-201ENST00000619798 666 ntBASIC14.96□□□□□ -0.01
HLA-DMBP28068 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-DMBP28068 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HLA-DMBP28068 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.02
HLA-DMBP28068 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC14.96□□□□□ -0.02
HLA-DMBP28068 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC14.95□□□□□ -0.02
HLA-DMBP28068 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
HLA-DMBP28068 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC14.95□□□□□ -0.02
HLA-DMBP28068 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
HLA-DMBP28068 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 AC010980.2-201ENST00000587099 1412 ntBASIC14.95□□□□□ -0.02
HLA-DMBP28068 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC14.95□□□□□ -0.02
HLA-DMBP28068 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC14.95□□□□□ -0.02
HLA-DMBP28068 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC14.95□□□□□ -0.02
HLA-DMBP28068 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC14.95□□□□□ -0.02
HLA-DMBP28068 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-DMBP28068 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 TP73-202ENST00000354437 2140 ntTSL 5 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 SLC29A4P1-201ENST00000398760 971 ntBASIC14.94□□□□□ -0.02
HLA-DMBP28068 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 DENND3-207ENST00000518347 850 ntTSL 2 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC14.94□□□□□ -0.02
HLA-DMBP28068 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HLA-DMBP28068 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms