Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HLA-DQA1P01909 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 AL136116.3-201ENST00000402907 1138 ntBASIC14.79□□□□□ -0.04
HLA-DQA1P01909 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC14.79□□□□□ -0.04
HLA-DQA1P01909 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 DPP3P2-201ENST00000416030 1696 ntBASIC14.78□□□□□ -0.04
HLA-DQA1P01909 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 QDPR-206ENST00000508623 601 ntTSL 3 BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 AL512631.2-201ENST00000604634 923 ntBASIC14.78□□□□□ -0.04
HLA-DQA1P01909 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-DQA1P01909 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 GOLGA2P11-201ENST00000562660 1621 ntBASIC14.77□□□□□ -0.04
HLA-DQA1P01909 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 AC008406.3-201ENST00000620001 1374 ntBASIC14.77□□□□□ -0.04
HLA-DQA1P01909 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-DQA1P01909 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 AC006455.2-201ENST00000429931 906 ntBASIC14.77□□□□□ -0.05
HLA-DQA1P01909 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC14.77□□□□□ -0.05
HLA-DQA1P01909 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms