Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
RTN3O95197 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
RTN3O95197 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RTN3O95197 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.73■□□□□ 0.91
RTN3O95197 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.73■□□□□ 0.91
RTN3O95197 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.73■□□□□ 0.91
RTN3O95197 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
RTN3O95197 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.73■□□□□ 0.91
RTN3O95197 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
RTN3O95197 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.73■□□□□ 0.91
RTN3O95197 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.73■□□□□ 0.91
RTN3O95197 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.73■□□□□ 0.91
RTN3O95197 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.73■□□□□ 0.91
RTN3O95197 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
RTN3O95197 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTN3O95197 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.72■□□□□ 0.91
RTN3O95197 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
RTN3O95197 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTN3O95197 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
RTN3O95197 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTN3O95197 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
RTN3O95197 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTN3O95197 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTN3O95197 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTN3O95197 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
RTN3O95197 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RTN3O95197 YBX1P10-201ENST00000444752 975 ntBASIC20.72■□□□□ 0.91
RTN3O95197 SNORA78-201ENST00000459373 127 ntBASIC20.72■□□□□ 0.91
RTN3O95197 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RTN3O95197 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTN3O95197 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.72■□□□□ 0.91
RTN3O95197 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.72■□□□□ 0.91
RTN3O95197 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.72■□□□□ 0.91
RTN3O95197 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.72■□□□□ 0.91
RTN3O95197 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.72■□□□□ 0.91
RTN3O95197 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.72■□□□□ 0.91
RTN3O95197 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.72■□□□□ 0.91
RTN3O95197 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTN3O95197 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.72■□□□□ 0.91
RTN3O95197 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTN3O95197 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
RTN3O95197 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.71■□□□□ 0.91
RTN3O95197 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
RTN3O95197 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.71■□□□□ 0.91
RTN3O95197 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.71■□□□□ 0.91
RTN3O95197 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.71■□□□□ 0.91
RTN3O95197 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
RTN3O95197 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTN3O95197 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
RTN3O95197 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
RTN3O95197 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.7■□□□□ 0.9
RTN3O95197 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.7■□□□□ 0.9
RTN3O95197 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTN3O95197 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
RTN3O95197 AL512408.1-201ENST00000569378 2000 ntBASIC20.7■□□□□ 0.9
RTN3O95197 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
RTN3O95197 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTN3O95197 AF186192.3-201ENST00000583427 947 ntBASIC20.7■□□□□ 0.9
RTN3O95197 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.7■□□□□ 0.9
RTN3O95197 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.7■□□□□ 0.9
RTN3O95197 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
RTN3O95197 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTN3O95197 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RTN3O95197 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
RTN3O95197 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTN3O95197 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
RTN3O95197 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTN3O95197 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTN3O95197 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTN3O95197 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTN3O95197 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RTN3O95197 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RTN3O95197 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms