Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC107956.1-201ENST00000494359 873 ntBASIC22.16■■□□□ 1.14
MSH4O15457 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC22.16■■□□□ 1.14
MSH4O15457 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC22.16■■□□□ 1.14
MSH4O15457 REXO2-216ENST00000544196 452 ntTSL 3 BASIC22.16■■□□□ 1.14
MSH4O15457 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC22.16■■□□□ 1.14
MSH4O15457 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC22.16■■□□□ 1.14
MSH4O15457 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC22.16■■□□□ 1.14
MSH4O15457 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH4O15457 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH4O15457 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH4O15457 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC22.16■■□□□ 1.14
MSH4O15457 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC22.16■■□□□ 1.14
MSH4O15457 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH4O15457 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH4O15457 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC22.16■■□□□ 1.14
MSH4O15457 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC22.15■■□□□ 1.14
MSH4O15457 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
MSH4O15457 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
MSH4O15457 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC22.15■■□□□ 1.14
MSH4O15457 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC22.15■■□□□ 1.14
MSH4O15457 AC233702.5-201ENST00000584107 538 ntBASIC22.15■■□□□ 1.14
MSH4O15457 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC22.15■■□□□ 1.14
MSH4O15457 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
MSH4O15457 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
MSH4O15457 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH4O15457 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
MSH4O15457 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC22.14■■□□□ 1.14
MSH4O15457 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
MSH4O15457 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC22.14■■□□□ 1.14
MSH4O15457 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
MSH4O15457 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
MSH4O15457 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC22.14■■□□□ 1.14
MSH4O15457 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
MSH4O15457 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC22.14■■□□□ 1.14
MSH4O15457 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC22.14■■□□□ 1.14
MSH4O15457 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
MSH4O15457 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH4O15457 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
MSH4O15457 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
MSH4O15457 AC012618.2-201ENST00000428058 849 ntBASIC22.14■■□□□ 1.13
MSH4O15457 TUBB8P6-201ENST00000436895 1288 ntBASIC22.14■■□□□ 1.13
MSH4O15457 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH4O15457 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
MSH4O15457 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
MSH4O15457 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC22.14■■□□□ 1.13
MSH4O15457 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
MSH4O15457 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
MSH4O15457 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC22.14■■□□□ 1.13
MSH4O15457 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH4O15457 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH4O15457 ME2-218ENST00000640965 2476 ntTSL 5 BASIC22.14■■□□□ 1.13
MSH4O15457 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH4O15457 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
MSH4O15457 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
MSH4O15457 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
MSH4O15457 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC22.13■■□□□ 1.13
MSH4O15457 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
MSH4O15457 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
MSH4O15457 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC22.13■■□□□ 1.13
MSH4O15457 AC073130.3-201ENST00000624389 2278 ntBASIC22.13■■□□□ 1.13
MSH4O15457 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH4O15457 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH4O15457 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH4O15457 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
MSH4O15457 AF186192.3-201ENST00000583427 947 ntBASIC22.13■■□□□ 1.13
MSH4O15457 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC22.13■■□□□ 1.13
MSH4O15457 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
MSH4O15457 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH4O15457 AL135905.2-201ENST00000584934 1404 ntBASIC22.13■■□□□ 1.13
MSH4O15457 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH4O15457 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
MSH4O15457 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH4O15457 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
MSH4O15457 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH4O15457 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
MSH4O15457 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH4O15457 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
MSH4O15457 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH4O15457 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH4O15457 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
MSH4O15457 MDFI-202ENST00000373050 809 ntTSL 2 BASIC22.12■■□□□ 1.13
MSH4O15457 MIR718-201ENST00000390190 70 ntBASIC22.12■■□□□ 1.13
MSH4O15457 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC22.12■■□□□ 1.13
MSH4O15457 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
MSH4O15457 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
MSH4O15457 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC22.12■■□□□ 1.13
MSH4O15457 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms