Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RPS3AP44-201ENST00000425466 790 ntBASIC6.15□□□□□ -1.42
MSX2P35548 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.15□□□□□ -1.42
MSX2P35548 AC084290.1-201ENST00000434995 374 ntBASIC6.15□□□□□ -1.42
MSX2P35548 RPL14P5-201ENST00000436474 730 ntBASIC6.15□□□□□ -1.42
MSX2P35548 RPS19P6-201ENST00000441327 433 ntBASIC6.15□□□□□ -1.42
MSX2P35548 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC6.15□□□□□ -1.42
MSX2P35548 AL133217.1-201ENST00000450980 425 ntBASIC6.15□□□□□ -1.42
MSX2P35548 RPL23AP23-201ENST00000452590 471 ntBASIC6.15□□□□□ -1.42
MSX2P35548 ATG12P2-201ENST00000456830 416 ntBASIC6.15□□□□□ -1.42
MSX2P35548 AC002075.1-201ENST00000457396 676 ntBASIC6.15□□□□□ -1.42
MSX2P35548 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.15□□□□□ -1.42
MSX2P35548 SNORA35.1-201ENST00000458908 128 ntBASIC6.15□□□□□ -1.42
MSX2P35548 AC092691.2-201ENST00000461787 803 ntBASIC6.15□□□□□ -1.42
MSX2P35548 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 RN7SL647P-201ENST00000485429 300 ntBASIC6.15□□□□□ -1.42
MSX2P35548 LSAMP-AS1-201ENST00000490351 553 ntTSL 2 BASIC6.15□□□□□ -1.42
MSX2P35548 AC091965.3-201ENST00000506236 208 ntBASIC6.15□□□□□ -1.42
MSX2P35548 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 NAT2-202ENST00000520116 716 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC6.15□□□□□ -1.42
MSX2P35548 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 MTCO2P15-201ENST00000532655 656 ntBASIC6.15□□□□□ -1.42
MSX2P35548 OR4H6P-201ENST00000563771 921 ntBASIC6.15□□□□□ -1.42
MSX2P35548 OR4C49P-201ENST00000563891 900 ntBASIC6.15□□□□□ -1.42
MSX2P35548 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC6.15□□□□□ -1.42
MSX2P35548 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 AC103987.3-201ENST00000582071 292 ntBASIC6.15□□□□□ -1.42
MSX2P35548 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC6.15□□□□□ -1.42
MSX2P35548 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC6.15□□□□□ -1.42
MSX2P35548 AC092960.1-201ENST00000604762 351 ntBASIC6.15□□□□□ -1.42
MSX2P35548 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 AL353600.1-201ENST00000608148 251 ntBASIC6.15□□□□□ -1.42
MSX2P35548 AL391425.1-201ENST00000613658 807 ntTSL 5 BASIC6.15□□□□□ -1.42
MSX2P35548 AL352984.2-202ENST00000613699 155 ntBASIC6.15□□□□□ -1.42
MSX2P35548 AC006328.2-201ENST00000623198 397 ntBASIC6.15□□□□□ -1.42
MSX2P35548 AC106782.7-201ENST00000624024 418 ntBASIC6.15□□□□□ -1.42
MSX2P35548 AC012005.2-201ENST00000624333 397 ntBASIC6.15□□□□□ -1.42
MSX2P35548 AC133555.5-201ENST00000624430 418 ntBASIC6.15□□□□□ -1.42
MSX2P35548 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.15□□□□□ -1.42
MSX2P35548 AC135068.11-201ENST00000636378 921 ntBASIC6.15□□□□□ -1.42
MSX2P35548 OR10G8-202ENST00000641224 1033 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
MSX2P35548 CASC19-274ENST00000642018 970 ntBASIC6.15□□□□□ -1.42
MSX2P35548 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC6.15□□□□□ -1.43
MSX2P35548 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
MSX2P35548 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
MSX2P35548 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
MSX2P35548 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
MSX2P35548 CNOT6LP1-201ENST00000559681 1462 ntBASIC6.15□□□□□ -1.43
MSX2P35548 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
MSX2P35548 AOX3P-204ENST00000491025 2107 ntBASIC6.14□□□□□ -1.43
MSX2P35548 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
MSX2P35548 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
MSX2P35548 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.14□□□□□ -1.43
MSX2P35548 VNN3-201ENST00000275223 1260 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 RNU6-697P-201ENST00000363348 107 ntBASIC6.14□□□□□ -1.43
MSX2P35548 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
MSX2P35548 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
MSX2P35548 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX2P35548 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX2P35548 MRPS21P5-201ENST00000417885 231 ntBASIC6.14□□□□□ -1.43
MSX2P35548 TIMM9P2-201ENST00000419324 266 ntBASIC6.14□□□□□ -1.43
MSX2P35548 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 AC007562.1-201ENST00000421819 517 ntBASIC6.14□□□□□ -1.43
MSX2P35548 ANXA2P2-201ENST00000435128 1020 ntBASIC6.14□□□□□ -1.43
MSX2P35548 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX2P35548 AL353706.1-201ENST00000436728 494 ntBASIC6.14□□□□□ -1.43
MSX2P35548 LDHAP2-201ENST00000437325 985 ntBASIC6.14□□□□□ -1.43
MSX2P35548 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX2P35548 AC023274.2-201ENST00000445264 521 ntBASIC6.14□□□□□ -1.43
MSX2P35548 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC6.14□□□□□ -1.43
MSX2P35548 AC092967.1-201ENST00000449016 481 ntBASIC6.14□□□□□ -1.43
MSX2P35548 RPL31P20-201ENST00000449593 360 ntBASIC6.14□□□□□ -1.43
MSX2P35548 AL354714.5-201ENST00000450131 590 ntBASIC6.14□□□□□ -1.43
MSX2P35548 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC6.14□□□□□ -1.43
MSX2P35548 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX2P35548 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.14□□□□□ -1.43
MSX2P35548 SSR1-206ENST00000479365 1118 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 AC008410.1-201ENST00000483777 339 ntBASIC6.14□□□□□ -1.43
MSX2P35548 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms