Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC087203.2-201ENST00000526502 1587 ntBASIC7.25□□□□□ -1.25
MSX1P28360 ZNF300P1-201ENST00000356555 1822 ntBASIC7.24□□□□□ -1.25
MSX1P28360 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 SLC6A2-206ENST00000567238 3160 ntTSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 CDH17-202ENST00000441892 2204 ntTSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 SPATS2-222ENST00000552918 2993 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 GPM6B-205ENST00000454189 3957 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 LINC02026-201ENST00000397645 1615 ntTSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 DLG2-218ENST00000524982 2872 ntTSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 ZMYND11-215ENST00000558098 1859 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 CFAP61-205ENST00000377306 2017 ntTSL 5 BASIC7.24□□□□□ -1.25
MSX1P28360 AC117382.2-201ENST00000564748 3151 ntBASIC7.24□□□□□ -1.25
MSX1P28360 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 THEM5-201ENST00000368817 984 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 Y_RNA.394-201ENST00000383942 103 ntBASIC7.24□□□□□ -1.25
MSX1P28360 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
MSX1P28360 AL080285.1-201ENST00000404225 984 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AL512422.1-201ENST00000407033 553 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AP000357.1-201ENST00000409926 1165 ntBASIC7.24□□□□□ -1.25
MSX1P28360 MTCO3P12-201ENST00000416718 547 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC7.24□□□□□ -1.25
MSX1P28360 AL009174.1-201ENST00000426577 416 ntBASIC7.24□□□□□ -1.25
MSX1P28360 MYO5BP3-201ENST00000431872 1279 ntBASIC7.24□□□□□ -1.25
MSX1P28360 HBBP1-201ENST00000433329 439 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC092802.3-201ENST00000434207 420 ntTSL 3 BASIC7.24□□□□□ -1.25
MSX1P28360 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 EFCAB14P1-201ENST00000442409 463 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC7.24□□□□□ -1.25
MSX1P28360 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC7.24□□□□□ -1.25
MSX1P28360 USP9YP12-201ENST00000450481 570 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 RPL34P33-201ENST00000486062 334 ntBASIC7.24□□□□□ -1.25
MSX1P28360 RPL7AP26-201ENST00000488538 813 ntBASIC7.24□□□□□ -1.25
MSX1P28360 ACTR3BP4-201ENST00000503033 1244 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC7.24□□□□□ -1.25
MSX1P28360 HMGB1P29-201ENST00000505659 499 ntBASIC7.24□□□□□ -1.25
MSX1P28360 MTCO1P30-201ENST00000515244 580 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC7.24□□□□□ -1.25
MSX1P28360 SNORA18.6-201ENST00000516792 115 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC092818.1-201ENST00000523411 639 ntTSL 3 BASIC7.24□□□□□ -1.25
MSX1P28360 AC083923.1-201ENST00000523708 376 ntBASIC7.24□□□□□ -1.25
MSX1P28360 OR5AP1P-201ENST00000529730 940 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC044839.1-209ENST00000529769 878 ntTSL 5 BASIC7.24□□□□□ -1.25
MSX1P28360 AP000757.2-201ENST00000531850 557 ntTSL 5 BASIC7.24□□□□□ -1.25
MSX1P28360 HPRT1P3-201ENST00000539521 576 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 AC016152.1-201ENST00000548344 521 ntTSL 3 BASIC7.24□□□□□ -1.25
MSX1P28360 AC023080.1-201ENST00000551663 931 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AL359212.1-201ENST00000556608 614 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC7.24□□□□□ -1.25
MSX1P28360 CCDC32-203ENST00000558113 576 ntTSL 3 BASIC7.24□□□□□ -1.25
MSX1P28360 CCDC32-210ENST00000559911 677 ntTSL 5 BASIC7.24□□□□□ -1.25
MSX1P28360 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC7.24□□□□□ -1.25
MSX1P28360 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC7.24□□□□□ -1.25
MSX1P28360 AC124312.5-201ENST00000604451 268 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC010200.2-201ENST00000605098 235 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC069304.2-201ENST00000605154 435 ntBASIC7.24□□□□□ -1.25
MSX1P28360 STMN1P1-201ENST00000617809 440 ntBASIC7.24□□□□□ -1.25
MSX1P28360 AC006840.1-201ENST00000623069 542 ntBASIC7.24□□□□□ -1.25
MSX1P28360 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 MTRF1-203ENST00000379480 2185 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 PITRM1-AS1-201ENST00000430356 3998 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 RBBP4-206ENST00000458695 1674 ntTSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 REG4-203ENST00000369401 2327 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 MAP3K20-208ENST00000539448 2312 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 AC093225.1-201ENST00000506867 1408 ntBASIC7.24□□□□□ -1.25
MSX1P28360 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 LMLN-202ENST00000332636 1812 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 DLG2-229ENST00000531015 2892 ntTSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 DCAF13P1-201ENST00000495256 1330 ntBASIC7.24□□□□□ -1.25
MSX1P28360 TRPS1-208ENST00000519076 3329 ntTSL 5 BASIC7.24□□□□□ -1.25
MSX1P28360 SELENOT-202ENST00000471696 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 LINC01142-201ENST00000440404 1457 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
MSX1P28360 ZNF658-206ENST00000621410 4025 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
MSX1P28360 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC7.23□□□□□ -1.25
MSX1P28360 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 DET1-202ENST00000444300 2154 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 DNAJC5G-202ENST00000402462 1904 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 AC092725.2-201ENST00000567658 1389 ntBASIC7.23□□□□□ -1.25
MSX1P28360 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 APBB2-224ENST00000513140 4166 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 LINC01105-204ENST00000444416 2695 ntTSL 2 BASIC7.23□□□□□ -1.25
MSX1P28360 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 FHL1-203ENST00000370676 833 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 ST3GAL3-213ENST00000372365 673 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms