Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZNF101P1-201ENST00000435701 1720 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 TNC-210ENST00000535648 7508 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 ABLIM1-206ENST00000392952 6841 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 PKD1L3-201ENST00000620267 5199 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AL359955.1-201ENST00000455242 3275 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 BX322650.1-201ENST00000332359 2143 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 MIR1193-201ENST00000408109 78 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 VDAC2P4-201ENST00000452925 711 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 BGLT3-201ENST00000564523 994 ntBASIC5.52□□□□□ -1.53
VPS13AQ96RL7 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 DPYSL2-201ENST00000311151 4603 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 PECAM1-203ENST00000563924 6831 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 OXCT1-205ENST00000510634 1441 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 ERG-206ENST00000398911 4914 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS13AQ96RL7 SCN5A-210ENST00000455624 7170 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AL034546.1-201ENST00000623740 3693 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 ZNF556-201ENST00000307635 6574 ntAPPRIS P3 TSL 2 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 RNA5SP211-201ENST00000365516 117 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AC092647.2-201ENST00000452998 253 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AC025674.1-201ENST00000507074 324 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 MIR4270-201ENST00000581799 70 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 MIR4260-201ENST00000583107 67 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AC009831.5-201ENST00000624000 3189 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 ACOT11-202ENST00000371316 6369 ntAPPRIS P4 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 FRMPD2-201ENST00000305531 4665 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 MIPEPP2-201ENST00000422560 1819 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CHIAP3-201ENST00000423668 1133 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 ZRANB2-AS1-202ENST00000450461 553 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 RN7SL165P-201ENST00000477476 291 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 RN7SL481P-201ENST00000477764 299 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 HPRT1P1-201ENST00000509498 657 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 uc_338.26-201ENST00000612659 160 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AC024255.1-201ENST00000614376 102 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CACNA1C-225ENST00000480911 6811 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 MED12-201ENST00000333646 6977 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 NHSL2-207ENST00000633930 13660 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 PWAR1-201ENST00000624188 2414 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CELF2-204ENST00000417956 8044 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 RNA5SP335-201ENST00000363817 110 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 RN7SKP126-201ENST00000411143 300 ntBASIC5.51□□□□□ -1.53
VPS13AQ96RL7 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS13AQ96RL7 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms