Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 SLC7A5P2-201ENST00000553010 536 ntBASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 AL355001.2-201ENST00000620617 1191 ntBASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.59■□□□□ 0.73
USH1CQ9Y6N9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.73
USH1CQ9Y6N9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USH1CQ9Y6N9 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.58■□□□□ 0.73
USH1CQ9Y6N9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.58■□□□□ 0.73
USH1CQ9Y6N9 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.58■□□□□ 0.73
USH1CQ9Y6N9 AC009237.14-201ENST00000609975 1594 ntBASIC19.58■□□□□ 0.73
USH1CQ9Y6N9 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
USH1CQ9Y6N9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
USH1CQ9Y6N9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USH1CQ9Y6N9 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
USH1CQ9Y6N9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
USH1CQ9Y6N9 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 MIR939-201ENST00000401314 82 ntBASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 AF213884.3-201ENST00000563833 479 ntBASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 AC106739.1-201ENST00000617035 715 ntBASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 CROCCP3-202ENST00000420820 1947 ntBASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.58■□□□□ 0.72
USH1CQ9Y6N9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 AC020763.4-201ENST00000623414 4170 ntBASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 AC007322.3-201ENST00000426526 701 ntBASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 AC096631.2-201ENST00000436136 790 ntBASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USH1CQ9Y6N9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 AC005332.8-201ENST00000622750 2735 ntBASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 AC091799.1-201ENST00000422823 811 ntBASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 AC091305.1-201ENST00000479476 895 ntBASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 AL358852.1-201ENST00000623174 1268 ntBASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms