Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 YBX1P10-201ENST00000444752 975 ntBASIC20.67■□□□□ 0.9
USP3Q9Y6I4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 Z99916.2-201ENST00000604037 246 ntBASIC20.67■□□□□ 0.9
USP3Q9Y6I4 AC004264.1-201ENST00000608354 794 ntBASIC20.67■□□□□ 0.9
USP3Q9Y6I4 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.67■□□□□ 0.9
USP3Q9Y6I4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP3Q9Y6I4 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.65■□□□□ 0.9
USP3Q9Y6I4 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 KRT18P16-201ENST00000510337 1294 ntBASIC20.65■□□□□ 0.9
USP3Q9Y6I4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
USP3Q9Y6I4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
USP3Q9Y6I4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 RPS2P55-201ENST00000397318 883 ntBASIC20.64■□□□□ 0.89
USP3Q9Y6I4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 RPS2P4-201ENST00000476944 856 ntBASIC20.64■□□□□ 0.89
USP3Q9Y6I4 AC107956.1-201ENST00000494359 873 ntBASIC20.64■□□□□ 0.89
USP3Q9Y6I4 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 AC233702.5-201ENST00000584107 538 ntBASIC20.64■□□□□ 0.89
USP3Q9Y6I4 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 AFG3L1P-217ENST00000557444 2447 ntBASIC20.64■□□□□ 0.89
USP3Q9Y6I4 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP3Q9Y6I4 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms