Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC069152.1-201ENST00000438030 544 ntBASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 AC090192.1-201ENST00000517740 490 ntBASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.6■□□□□ 0.73
VPS9D1Q9Y2B5 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 AC142086.2-201ENST00000569753 217 ntBASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 TREX1-205ENST00000625293 1783 ntBASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS9D1Q9Y2B5 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS9D1Q9Y2B5 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.73
VPS9D1Q9Y2B5 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS9D1Q9Y2B5 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS9D1Q9Y2B5 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.58■□□□□ 0.73
VPS9D1Q9Y2B5 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
VPS9D1Q9Y2B5 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 AC104771.1-201ENST00000603335 964 ntBASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS9D1Q9Y2B5 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 PNMA6B-201ENST00000538162 1200 ntBASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
VPS9D1Q9Y2B5 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VPS9D1Q9Y2B5 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS9D1Q9Y2B5 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS9D1Q9Y2B5 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
VPS9D1Q9Y2B5 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.56■□□□□ 0.72
VPS9D1Q9Y2B5 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.56■□□□□ 0.72
VPS9D1Q9Y2B5 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS9D1Q9Y2B5 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS9D1Q9Y2B5 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
VPS9D1Q9Y2B5 TFP1-202ENST00000475455 1573 ntBASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms