Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 AC069152.1-201ENST00000438030 544 ntBASIC21.18■□□□□ 0.98
SIX2Q9NPC8 PNMA6B-201ENST00000538162 1200 ntBASIC21.18■□□□□ 0.98
SIX2Q9NPC8 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 AC060766.5-201ENST00000590539 871 ntBASIC21.18■□□□□ 0.98
SIX2Q9NPC8 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.18■□□□□ 0.98
SIX2Q9NPC8 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX2Q9NPC8 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX2Q9NPC8 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX2Q9NPC8 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
SIX2Q9NPC8 AL032819.2-201ENST00000624543 2162 ntBASIC21.14■□□□□ 0.98
SIX2Q9NPC8 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX2Q9NPC8 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX2Q9NPC8 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
SIX2Q9NPC8 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SIX2Q9NPC8 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
SIX2Q9NPC8 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
SIX2Q9NPC8 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX2Q9NPC8 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SIX2Q9NPC8 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
SIX2Q9NPC8 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.14■□□□□ 0.98
SIX2Q9NPC8 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX2Q9NPC8 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.14■□□□□ 0.97
SIX2Q9NPC8 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.14■□□□□ 0.97
SIX2Q9NPC8 AC133041.1-202ENST00000642053 222 ntBASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms