Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.32■□□□□ 0.36
LIME1Q9H400 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.32■□□□□ 0.36
LIME1Q9H400 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.32■□□□□ 0.36
LIME1Q9H400 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
LIME1Q9H400 AL356652.1-201ENST00000615962 565 ntBASIC17.32■□□□□ 0.36
LIME1Q9H400 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.32■□□□□ 0.36
LIME1Q9H400 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIME1Q9H400 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.32■□□□□ 0.36
LIME1Q9H400 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.32■□□□□ 0.36
LIME1Q9H400 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIME1Q9H400 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.32■□□□□ 0.36
LIME1Q9H400 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LIME1Q9H400 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIME1Q9H400 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIME1Q9H400 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIME1Q9H400 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIME1Q9H400 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.31■□□□□ 0.36
LIME1Q9H400 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
LIME1Q9H400 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
LIME1Q9H400 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.31■□□□□ 0.36
LIME1Q9H400 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.31■□□□□ 0.36
LIME1Q9H400 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.31■□□□□ 0.36
LIME1Q9H400 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
LIME1Q9H400 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.31■□□□□ 0.36
LIME1Q9H400 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.31■□□□□ 0.36
LIME1Q9H400 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 AL512408.1-201ENST00000569378 2000 ntBASIC17.31■□□□□ 0.36
LIME1Q9H400 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.31■□□□□ 0.36
LIME1Q9H400 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.31■□□□□ 0.36
LIME1Q9H400 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.31■□□□□ 0.36
LIME1Q9H400 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIME1Q9H400 AL162377.1-201ENST00000618844 1793 ntBASIC17.3■□□□□ 0.36
LIME1Q9H400 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIME1Q9H400 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIME1Q9H400 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIME1Q9H400 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIME1Q9H400 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIME1Q9H400 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.3■□□□□ 0.36
LIME1Q9H400 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.3■□□□□ 0.36
LIME1Q9H400 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIME1Q9H400 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LIME1Q9H400 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LIME1Q9H400 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.3■□□□□ 0.36
LIME1Q9H400 AC145285.6-201ENST00000604632 637 ntBASIC17.3■□□□□ 0.36
LIME1Q9H400 AC005363.2-201ENST00000618631 242 ntBASIC17.3■□□□□ 0.36
LIME1Q9H400 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIME1Q9H400 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIME1Q9H400 AC124283.5-201ENST00000624661 1809 ntBASIC17.3■□□□□ 0.36
LIME1Q9H400 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIME1Q9H400 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LIME1Q9H400 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LIME1Q9H400 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
LIME1Q9H400 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.29■□□□□ 0.36
LIME1Q9H400 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
LIME1Q9H400 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 KRT18P57-201ENST00000443599 1254 ntBASIC17.29■□□□□ 0.36
LIME1Q9H400 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.29■□□□□ 0.36
LIME1Q9H400 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.29■□□□□ 0.36
LIME1Q9H400 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.29■□□□□ 0.36
LIME1Q9H400 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
LIME1Q9H400 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
LIME1Q9H400 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
LIME1Q9H400 AC079598.2-202ENST00000546624 1451 ntBASIC17.29■□□□□ 0.36
LIME1Q9H400 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIME1Q9H400 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.29■□□□□ 0.36
LIME1Q9H400 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.29■□□□□ 0.36
LIME1Q9H400 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.29■□□□□ 0.36
LIME1Q9H400 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIME1Q9H400 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.28■□□□□ 0.36
LIME1Q9H400 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIME1Q9H400 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIME1Q9H400 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIME1Q9H400 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIME1Q9H400 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.28■□□□□ 0.36
LIME1Q9H400 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.28■□□□□ 0.36
LIME1Q9H400 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LIME1Q9H400 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.28■□□□□ 0.36
LIME1Q9H400 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms