Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 AC087289.5-201ENST00000586076 3175 ntBASIC17.54■□□□□ 0.4
USB1Q9BQ65 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
USB1Q9BQ65 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.54■□□□□ 0.4
USB1Q9BQ65 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USB1Q9BQ65 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.53■□□□□ 0.4
USB1Q9BQ65 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.53■□□□□ 0.4
USB1Q9BQ65 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USB1Q9BQ65 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USB1Q9BQ65 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USB1Q9BQ65 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USB1Q9BQ65 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.53■□□□□ 0.4
USB1Q9BQ65 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
USB1Q9BQ65 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.53■□□□□ 0.4
USB1Q9BQ65 RPS2P52-201ENST00000469610 820 ntBASIC17.53■□□□□ 0.4
USB1Q9BQ65 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
USB1Q9BQ65 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.53■□□□□ 0.4
USB1Q9BQ65 AC093827.2-201ENST00000512654 315 ntBASIC17.53■□□□□ 0.4
USB1Q9BQ65 AL031963.3-201ENST00000606441 850 ntBASIC17.53■□□□□ 0.4
USB1Q9BQ65 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USB1Q9BQ65 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USB1Q9BQ65 AL135905.2-201ENST00000584934 1404 ntBASIC17.53■□□□□ 0.4
USB1Q9BQ65 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
USB1Q9BQ65 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
USB1Q9BQ65 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
USB1Q9BQ65 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.52■□□□□ 0.4
USB1Q9BQ65 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
USB1Q9BQ65 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.52■□□□□ 0.4
USB1Q9BQ65 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.52■□□□□ 0.4
USB1Q9BQ65 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.52■□□□□ 0.4
USB1Q9BQ65 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.52■□□□□ 0.4
USB1Q9BQ65 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.52■□□□□ 0.4
USB1Q9BQ65 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.52■□□□□ 0.4
USB1Q9BQ65 AL121906.2-201ENST00000621597 723 ntBASIC17.52■□□□□ 0.4
USB1Q9BQ65 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.52■□□□□ 0.4
USB1Q9BQ65 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USB1Q9BQ65 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.52■□□□□ 0.4
USB1Q9BQ65 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.52■□□□□ 0.39
USB1Q9BQ65 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USB1Q9BQ65 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
USB1Q9BQ65 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
USB1Q9BQ65 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USB1Q9BQ65 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.52■□□□□ 0.39
USB1Q9BQ65 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.52■□□□□ 0.39
USB1Q9BQ65 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
USB1Q9BQ65 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
USB1Q9BQ65 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
USB1Q9BQ65 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USB1Q9BQ65 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 AC239809.2-201ENST00000415381 517 ntBASIC17.51■□□□□ 0.39
USB1Q9BQ65 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 AP001412.1-201ENST00000608405 714 ntBASIC17.51■□□□□ 0.39
USB1Q9BQ65 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 PLK5-205ENST00000642079 1969 ntBASIC17.51■□□□□ 0.39
USB1Q9BQ65 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.51■□□□□ 0.39
USB1Q9BQ65 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USB1Q9BQ65 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
USB1Q9BQ65 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USB1Q9BQ65 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USB1Q9BQ65 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.5■□□□□ 0.39
USB1Q9BQ65 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms