Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.41■■□□□ 1.02
LRCH3Q96II8 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LRCH3Q96II8 AC083849.1-201ENST00000615227 514 ntBASIC21.41■■□□□ 1.02
LRCH3Q96II8 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.41■■□□□ 1.02
LRCH3Q96II8 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LRCH3Q96II8 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRCH3Q96II8 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRCH3Q96II8 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRCH3Q96II8 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
LRCH3Q96II8 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.4■■□□□ 1.02
LRCH3Q96II8 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
LRCH3Q96II8 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC21.4■■□□□ 1.02
LRCH3Q96II8 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.4■■□□□ 1.02
LRCH3Q96II8 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.4■■□□□ 1.02
LRCH3Q96II8 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC21.4■■□□□ 1.02
LRCH3Q96II8 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.4■■□□□ 1.02
LRCH3Q96II8 AC010653.2-201ENST00000623505 997 ntBASIC21.4■■□□□ 1.02
LRCH3Q96II8 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRCH3Q96II8 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
LRCH3Q96II8 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.39■■□□□ 1.02
LRCH3Q96II8 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.39■■□□□ 1.01
LRCH3Q96II8 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LRCH3Q96II8 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LRCH3Q96II8 HLA-G-203ENST00000376818 1127 ntBASIC21.39■■□□□ 1.01
LRCH3Q96II8 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC21.39■■□□□ 1.01
LRCH3Q96II8 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LRCH3Q96II8 AC004980.1-204ENST00000429707 299 ntBASIC21.39■■□□□ 1.01
LRCH3Q96II8 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.39■■□□□ 1.01
LRCH3Q96II8 ZNF444P1-201ENST00000559497 298 ntBASIC21.39■■□□□ 1.01
LRCH3Q96II8 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.39■■□□□ 1.01
LRCH3Q96II8 AL671883.3-201ENST00000603274 991 ntBASIC21.39■■□□□ 1.01
LRCH3Q96II8 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.39■■□□□ 1.01
LRCH3Q96II8 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
LRCH3Q96II8 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.39■■□□□ 1.01
LRCH3Q96II8 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.39■■□□□ 1.01
LRCH3Q96II8 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LRCH3Q96II8 AC242852.2-201ENST00000615738 1807 ntBASIC21.39■■□□□ 1.01
LRCH3Q96II8 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
LRCH3Q96II8 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.38■■□□□ 1.01
LRCH3Q96II8 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
LRCH3Q96II8 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LRCH3Q96II8 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
LRCH3Q96II8 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.38■■□□□ 1.01
LRCH3Q96II8 AL031008.1-201ENST00000619963 541 ntBASIC21.38■■□□□ 1.01
LRCH3Q96II8 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LRCH3Q96II8 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LRCH3Q96II8 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LRCH3Q96II8 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.38■■□□□ 1.01
LRCH3Q96II8 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LRCH3Q96II8 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LRCH3Q96II8 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
LRCH3Q96II8 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LRCH3Q96II8 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LRCH3Q96II8 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LRCH3Q96II8 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
LRCH3Q96II8 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.37■■□□□ 1.01
LRCH3Q96II8 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LRCH3Q96II8 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LRCH3Q96II8 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC21.37■■□□□ 1.01
LRCH3Q96II8 C1QL1P1-201ENST00000568105 661 ntBASIC21.37■■□□□ 1.01
LRCH3Q96II8 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.37■■□□□ 1.01
LRCH3Q96II8 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
LRCH3Q96II8 AP000692.2-201ENST00000608391 879 ntBASIC21.37■■□□□ 1.01
LRCH3Q96II8 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.37■■□□□ 1.01
LRCH3Q96II8 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
LRCH3Q96II8 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.37■■□□□ 1.01
LRCH3Q96II8 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LRCH3Q96II8 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LRCH3Q96II8 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
LRCH3Q96II8 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
LRCH3Q96II8 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.36■■□□□ 1.01
LRCH3Q96II8 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 AC112907.2-201ENST00000448639 330 ntBASIC21.36■■□□□ 1.01
LRCH3Q96II8 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.36■■□□□ 1.01
LRCH3Q96II8 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.36■■□□□ 1.01
LRCH3Q96II8 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.36■■□□□ 1.01
LRCH3Q96II8 LINC02084-201ENST00000606069 1096 ntBASIC21.36■■□□□ 1.01
LRCH3Q96II8 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRCH3Q96II8 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms