Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 AP000525.1-201ENST00000608286 694 ntBASIC6.07□□□□□ -1.44
SYNE1Q8NF91 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 RER1-204ENST00000378518 522 ntTSL 3 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 AC004264.1-201ENST00000608354 794 ntBASIC6.07□□□□□ -1.44
SYNE1Q8NF91 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 FAM197Y1-201ENST00000421178 764 ntBASIC6.07□□□□□ -1.44
SYNE1Q8NF91 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 WDR88-203ENST00000592765 651 ntTSL 5 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
SYNE1Q8NF91 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 AP001412.1-201ENST00000608405 714 ntBASIC6.06□□□□□ -1.44
SYNE1Q8NF91 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 RNF165-205ENST00000588679 2904 ntBASIC6.06□□□□□ -1.44
SYNE1Q8NF91 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 AL121603.2-201ENST00000557373 2117 ntBASIC6.06□□□□□ -1.44
SYNE1Q8NF91 AC079328.2-201ENST00000561241 3354 ntBASIC6.06□□□□□ -1.44
SYNE1Q8NF91 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 DHDH-203ENST00000522614 776 ntTSL 5 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 TPM1-226ENST00000560959 925 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 AC006011.2-201ENST00000621313 1158 ntBASIC6.06□□□□□ -1.44
SYNE1Q8NF91 MFF-203ENST00000349901 1716 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 TMPOP1-202ENST00000424642 1267 ntBASIC6.06□□□□□ -1.44
SYNE1Q8NF91 AL121894.2-201ENST00000602977 491 ntBASIC6.06□□□□□ -1.44
SYNE1Q8NF91 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
SYNE1Q8NF91 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms