Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 CLN6-221ENST00000637494 765 ntTSL 5 BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USHBP1Q8N6Y0 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC26.08■■□□□ 1.76
USHBP1Q8N6Y0 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 GRAMD4P8-201ENST00000605465 1115 ntBASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 AC131212.4-201ENST00000623606 975 ntBASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 RCC2P6-201ENST00000526625 1557 ntBASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC26.07■■□□□ 1.76
USHBP1Q8N6Y0 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 C2orf69P3-201ENST00000565542 1120 ntBASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 SLC25A1P4-201ENST00000567977 778 ntBASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 RMI2-205ENST00000576027 818 ntTSL 2 BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 DGCR10-201ENST00000609839 495 ntBASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
USHBP1Q8N6Y0 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 TSPY14P-201ENST00000303979 915 ntBASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 FAM87A-204ENST00000613235 858 ntBASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USHBP1Q8N6Y0 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 TPM1-226ENST00000560959 925 ntTSL 2 BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
USHBP1Q8N6Y0 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 EGLN1P1-201ENST00000531623 762 ntBASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 AC011298.2-201ENST00000617989 482 ntBASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 AC130371.2-201ENST00000619443 611 ntBASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 ME2-216ENST00000639850 2331 ntTSL 5 BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USHBP1Q8N6Y0 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC26.02■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms