Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
CCDC144BQ3MJ40 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CCDC144BQ3MJ40 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
CCDC144BQ3MJ40 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
CCDC144BQ3MJ40 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CCDC144BQ3MJ40 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.26
CCDC144BQ3MJ40 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
CCDC144BQ3MJ40 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CCDC144BQ3MJ40 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
CCDC144BQ3MJ40 STK25-205ENST00000405883 1904 ntTSL 2 BASIC22.89■■□□□ 1.25
CCDC144BQ3MJ40 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC144BQ3MJ40 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.25
CCDC144BQ3MJ40 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC144BQ3MJ40 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC144BQ3MJ40 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC144BQ3MJ40 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 TSPY15P-201ENST00000457163 923 ntBASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 DHDH-203ENST00000522614 776 ntTSL 5 BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC144BQ3MJ40 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 PRKY-204ENST00000533551 1019 ntBASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 RARRES2P10-201ENST00000564312 460 ntBASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 MIR4785-201ENST00000585005 73 ntBASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 CABP2-204ENST00000636477 941 ntTSL 5 BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC144BQ3MJ40 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 MIR1224-201ENST00000408193 85 ntBASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 HES2-206ENST00000489730 730 ntTSL 2 BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 AC011484.1-201ENST00000377652 1995 ntBASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC22.86■■□□□ 1.25
CCDC144BQ3MJ40 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC144BQ3MJ40 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms