Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH12P55289 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.35■□□□□ 0.53
CDH12P55289 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
CDH12P55289 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH12P55289 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.34■□□□□ 0.53
CDH12P55289 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH12P55289 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH12P55289 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH12P55289 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH12P55289 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH12P55289 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH12P55289 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH12P55289 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH12P55289 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.34■□□□□ 0.53
CDH12P55289 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH12P55289 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.34■□□□□ 0.53
CDH12P55289 MIR5787-201ENST00000611784 55 ntBASIC18.34■□□□□ 0.53
CDH12P55289 BID-214ENST00000617586 542 ntTSL 5 BASIC18.34■□□□□ 0.53
CDH12P55289 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH12P55289 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH12P55289 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH12P55289 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CDH12P55289 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH12P55289 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH12P55289 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH12P55289 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.33■□□□□ 0.53
CDH12P55289 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.33■□□□□ 0.53
CDH12P55289 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CDH12P55289 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.33■□□□□ 0.53
CDH12P55289 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
CDH12P55289 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CDH12P55289 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH12P55289 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CDH12P55289 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.33■□□□□ 0.52
CDH12P55289 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.33■□□□□ 0.52
CDH12P55289 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.33■□□□□ 0.52
CDH12P55289 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.33■□□□□ 0.52
CDH12P55289 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CDH12P55289 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CDH12P55289 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CDH12P55289 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CDH12P55289 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.33■□□□□ 0.52
CDH12P55289 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH12P55289 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.32■□□□□ 0.52
CDH12P55289 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH12P55289 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 CYP2T1P-201ENST00000432607 1285 ntBASIC18.32■□□□□ 0.52
CDH12P55289 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.32■□□□□ 0.52
CDH12P55289 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH12P55289 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH12P55289 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CDH12P55289 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.32■□□□□ 0.52
CDH12P55289 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.32■□□□□ 0.52
CDH12P55289 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CDH12P55289 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CDH12P55289 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDH12P55289 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
CDH12P55289 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH12P55289 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.31■□□□□ 0.52
CDH12P55289 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.31■□□□□ 0.52
CDH12P55289 PTBP1P-201ENST00000554374 1601 ntBASIC18.31■□□□□ 0.52
CDH12P55289 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
CDH12P55289 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.31■□□□□ 0.52
CDH12P55289 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.31■□□□□ 0.52
CDH12P55289 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.31■□□□□ 0.52
CDH12P55289 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CDH12P55289 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.31■□□□□ 0.52
CDH12P55289 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.31■□□□□ 0.52
CDH12P55289 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDH12P55289 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH12P55289 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.3■□□□□ 0.52
CDH12P55289 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH12P55289 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH12P55289 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms