Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SHMT2P34897 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.3■□□□□ 0.68
SHMT2P34897 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHMT2P34897 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHMT2P34897 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHMT2P34897 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHMT2P34897 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.3■□□□□ 0.68
SHMT2P34897 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
SHMT2P34897 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.29■□□□□ 0.68
SHMT2P34897 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.29■□□□□ 0.68
SHMT2P34897 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.29■□□□□ 0.68
SHMT2P34897 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 AL121906.2-201ENST00000621597 723 ntBASIC19.29■□□□□ 0.68
SHMT2P34897 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SHMT2P34897 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.29■□□□□ 0.68
SHMT2P34897 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.29■□□□□ 0.68
SHMT2P34897 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHMT2P34897 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.29■□□□□ 0.68
SHMT2P34897 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SHMT2P34897 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.28■□□□□ 0.68
SHMT2P34897 PRORSD1P-201ENST00000295112 541 ntBASIC19.28■□□□□ 0.68
SHMT2P34897 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.28■□□□□ 0.68
SHMT2P34897 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.28■□□□□ 0.68
SHMT2P34897 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.28■□□□□ 0.68
SHMT2P34897 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.28■□□□□ 0.68
SHMT2P34897 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHMT2P34897 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.27■□□□□ 0.68
SHMT2P34897 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SHMT2P34897 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
SHMT2P34897 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SHMT2P34897 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
SHMT2P34897 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.27■□□□□ 0.68
SHMT2P34897 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.27■□□□□ 0.68
SHMT2P34897 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 AC233263.1-201ENST00000578059 224 ntBASIC19.27■□□□□ 0.68
SHMT2P34897 AL121829.2-201ENST00000620908 328 ntBASIC19.27■□□□□ 0.68
SHMT2P34897 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHMT2P34897 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
SHMT2P34897 BX119927.1-201ENST00000636596 1552 ntBASIC19.27■□□□□ 0.67
SHMT2P34897 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SHMT2P34897 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.27■□□□□ 0.67
SHMT2P34897 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
SHMT2P34897 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SHMT2P34897 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.27■□□□□ 0.67
SHMT2P34897 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
SHMT2P34897 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.26■□□□□ 0.67
SHMT2P34897 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SHMT2P34897 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.26■□□□□ 0.67
SHMT2P34897 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHMT2P34897 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHMT2P34897 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHMT2P34897 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHMT2P34897 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SHMT2P34897 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.26■□□□□ 0.67
SHMT2P34897 AL512408.1-201ENST00000569378 2000 ntBASIC19.26■□□□□ 0.67
SHMT2P34897 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.26■□□□□ 0.67
SHMT2P34897 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.26■□□□□ 0.67
SHMT2P34897 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.26■□□□□ 0.67
SHMT2P34897 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.26■□□□□ 0.67
SHMT2P34897 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.26■□□□□ 0.67
SHMT2P34897 RN7SL471P-201ENST00000580476 299 ntBASIC19.26■□□□□ 0.67
SHMT2P34897 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.26■□□□□ 0.67
SHMT2P34897 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHMT2P34897 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHMT2P34897 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHMT2P34897 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHMT2P34897 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.26■□□□□ 0.67
SHMT2P34897 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms