Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.75■□□□□ 0.75
PTPN4P29074 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.75■□□□□ 0.75
PTPN4P29074 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
PTPN4P29074 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
PTPN4P29074 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.75■□□□□ 0.75
PTPN4P29074 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
PTPN4P29074 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.75■□□□□ 0.75
PTPN4P29074 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.75■□□□□ 0.75
PTPN4P29074 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN4P29074 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN4P29074 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.74■□□□□ 0.75
PTPN4P29074 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
PTPN4P29074 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.74■□□□□ 0.75
PTPN4P29074 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN4P29074 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN4P29074 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.74■□□□□ 0.75
PTPN4P29074 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.74■□□□□ 0.75
PTPN4P29074 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.74■□□□□ 0.75
PTPN4P29074 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.74■□□□□ 0.75
PTPN4P29074 AC092118.2-201ENST00000613495 667 ntBASIC19.74■□□□□ 0.75
PTPN4P29074 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.74■□□□□ 0.75
PTPN4P29074 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN4P29074 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.74■□□□□ 0.75
PTPN4P29074 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN4P29074 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN4P29074 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN4P29074 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTPN4P29074 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
PTPN4P29074 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
PTPN4P29074 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
PTPN4P29074 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.73■□□□□ 0.75
PTPN4P29074 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
PTPN4P29074 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.73■□□□□ 0.75
PTPN4P29074 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.73■□□□□ 0.75
PTPN4P29074 AC243732.1-201ENST00000612648 864 ntBASIC19.73■□□□□ 0.75
PTPN4P29074 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
PTPN4P29074 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 AC061975.6-201ENST00000579045 1553 ntBASIC19.73■□□□□ 0.75
PTPN4P29074 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
PTPN4P29074 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTPN4P29074 TMEM179-206ENST00000616017 1645 ntBASIC19.73■□□□□ 0.75
PTPN4P29074 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN4P29074 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.72■□□□□ 0.75
PTPN4P29074 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN4P29074 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN4P29074 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN4P29074 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN4P29074 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN4P29074 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.72■□□□□ 0.75
PTPN4P29074 BX276092.2-201ENST00000417668 665 ntBASIC19.72■□□□□ 0.75
PTPN4P29074 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.72■□□□□ 0.75
PTPN4P29074 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.72■□□□□ 0.75
PTPN4P29074 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.72■□□□□ 0.75
PTPN4P29074 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN4P29074 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.72■□□□□ 0.75
PTPN4P29074 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.72■□□□□ 0.75
PTPN4P29074 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN4P29074 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN4P29074 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.72■□□□□ 0.75
PTPN4P29074 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN4P29074 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PTPN4P29074 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
PTPN4P29074 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN4P29074 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN4P29074 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
PTPN4P29074 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.71■□□□□ 0.75
PTPN4P29074 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.71■□□□□ 0.75
PTPN4P29074 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN4P29074 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN4P29074 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN4P29074 RNA5SP413-201ENST00000516373 109 ntBASIC19.71■□□□□ 0.75
PTPN4P29074 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.71■□□□□ 0.75
PTPN4P29074 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PTPN4P29074 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
PTPN4P29074 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms