Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.82■□□□□ 0.92
BDNFP23560 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
BDNFP23560 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.82■□□□□ 0.92
BDNFP23560 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.82■□□□□ 0.92
BDNFP23560 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.82■□□□□ 0.92
BDNFP23560 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
BDNFP23560 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
BDNFP23560 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
BDNFP23560 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
BDNFP23560 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
BDNFP23560 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
BDNFP23560 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.81■□□□□ 0.92
BDNFP23560 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
BDNFP23560 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
BDNFP23560 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
BDNFP23560 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.81■□□□□ 0.92
BDNFP23560 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.81■□□□□ 0.92
BDNFP23560 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.81■□□□□ 0.92
BDNFP23560 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.81■□□□□ 0.92
BDNFP23560 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.81■□□□□ 0.92
BDNFP23560 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
BDNFP23560 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.81■□□□□ 0.92
BDNFP23560 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
BDNFP23560 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
BDNFP23560 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.81■□□□□ 0.92
BDNFP23560 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
BDNFP23560 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
BDNFP23560 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.8■□□□□ 0.92
BDNFP23560 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
BDNFP23560 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
BDNFP23560 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
BDNFP23560 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
BDNFP23560 YBX1P10-201ENST00000444752 975 ntBASIC20.8■□□□□ 0.92
BDNFP23560 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
BDNFP23560 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.8■□□□□ 0.92
BDNFP23560 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.8■□□□□ 0.92
BDNFP23560 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.8■□□□□ 0.92
BDNFP23560 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
BDNFP23560 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.8■□□□□ 0.92
BDNFP23560 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.8■□□□□ 0.92
BDNFP23560 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
BDNFP23560 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
BDNFP23560 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
BDNFP23560 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
BDNFP23560 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.79■□□□□ 0.92
BDNFP23560 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
BDNFP23560 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.79■□□□□ 0.92
BDNFP23560 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
BDNFP23560 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
BDNFP23560 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
BDNFP23560 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.79■□□□□ 0.92
BDNFP23560 AL353807.1-201ENST00000427475 662 ntBASIC20.79■□□□□ 0.92
BDNFP23560 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.79■□□□□ 0.92
BDNFP23560 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.79■□□□□ 0.92
BDNFP23560 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.79■□□□□ 0.92
BDNFP23560 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.79■□□□□ 0.92
BDNFP23560 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
BDNFP23560 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.79■□□□□ 0.92
BDNFP23560 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.79■□□□□ 0.92
BDNFP23560 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BDNFP23560 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.79■□□□□ 0.92
BDNFP23560 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
BDNFP23560 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.78■□□□□ 0.92
BDNFP23560 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.78■□□□□ 0.92
BDNFP23560 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.78■□□□□ 0.92
BDNFP23560 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.78■□□□□ 0.92
BDNFP23560 AP001271.2-201ENST00000624018 1556 ntBASIC20.78■□□□□ 0.92
BDNFP23560 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.78■□□□□ 0.92
BDNFP23560 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.78■□□□□ 0.92
BDNFP23560 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.78■□□□□ 0.92
BDNFP23560 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.78■□□□□ 0.92
BDNFP23560 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.78■□□□□ 0.92
BDNFP23560 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
BDNFP23560 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.78■□□□□ 0.92
BDNFP23560 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.78■□□□□ 0.92
BDNFP23560 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms