Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.28■□□□□ 0.68
CDH3P22223 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.28■□□□□ 0.68
CDH3P22223 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.28■□□□□ 0.68
CDH3P22223 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.28■□□□□ 0.68
CDH3P22223 AL359736.2-201ENST00000621992 437 ntBASIC19.28■□□□□ 0.68
CDH3P22223 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.28■□□□□ 0.68
CDH3P22223 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CDH3P22223 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.28■□□□□ 0.68
CDH3P22223 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.27■□□□□ 0.68
CDH3P22223 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDH3P22223 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CDH3P22223 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH3P22223 KRT8P20-201ENST00000423953 1409 ntBASIC19.27■□□□□ 0.68
CDH3P22223 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH3P22223 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CDH3P22223 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDH3P22223 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
CDH3P22223 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.27■□□□□ 0.68
CDH3P22223 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDH3P22223 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH3P22223 RPPH1-201ENST00000516869 333 ntBASIC19.27■□□□□ 0.68
CDH3P22223 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.27■□□□□ 0.68
CDH3P22223 AL031963.3-201ENST00000606441 850 ntBASIC19.27■□□□□ 0.68
CDH3P22223 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDH3P22223 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CDH3P22223 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDH3P22223 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH3P22223 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDH3P22223 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDH3P22223 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH3P22223 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH3P22223 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.26■□□□□ 0.67
CDH3P22223 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH3P22223 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH3P22223 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CDH3P22223 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH3P22223 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH3P22223 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.26■□□□□ 0.67
CDH3P22223 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CDH3P22223 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.26■□□□□ 0.67
CDH3P22223 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
CDH3P22223 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH3P22223 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.26■□□□□ 0.67
CDH3P22223 AP006294.2-201ENST00000641667 209 ntBASIC19.26■□□□□ 0.67
CDH3P22223 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH3P22223 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CDH3P22223 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH3P22223 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.26■□□□□ 0.67
CDH3P22223 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH3P22223 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CDH3P22223 PTBP1P-201ENST00000554374 1601 ntBASIC19.25■□□□□ 0.67
CDH3P22223 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CDH3P22223 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.25■□□□□ 0.67
CDH3P22223 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CDH3P22223 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.25■□□□□ 0.67
CDH3P22223 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CDH3P22223 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.25■□□□□ 0.67
CDH3P22223 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CDH3P22223 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.25■□□□□ 0.67
CDH3P22223 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH3P22223 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CDH3P22223 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.25■□□□□ 0.67
CDH3P22223 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.25■□□□□ 0.67
CDH3P22223 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CDH3P22223 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH3P22223 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CDH3P22223 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH3P22223 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH3P22223 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH3P22223 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.24■□□□□ 0.67
CDH3P22223 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDH3P22223 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.24■□□□□ 0.67
CDH3P22223 AC093827.2-201ENST00000512654 315 ntBASIC19.24■□□□□ 0.67
CDH3P22223 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.24■□□□□ 0.67
CDH3P22223 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.24■□□□□ 0.67
CDH3P22223 MTDHP1-201ENST00000605323 784 ntBASIC19.24■□□□□ 0.67
CDH3P22223 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.24■□□□□ 0.67
CDH3P22223 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH3P22223 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.24■□□□□ 0.67
CDH3P22223 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
CDH3P22223 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH3P22223 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms