Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDGFRAP16234 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDGFRAP16234 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PDGFRAP16234 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PDGFRAP16234 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDGFRAP16234 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.69■□□□□ 0.9
PDGFRAP16234 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFRAP16234 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.69■□□□□ 0.9
PDGFRAP16234 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.69■□□□□ 0.9
PDGFRAP16234 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
PDGFRAP16234 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFRAP16234 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFRAP16234 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFRAP16234 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFRAP16234 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFRAP16234 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.69■□□□□ 0.9
PDGFRAP16234 UNC93B4-201ENST00000505679 747 ntBASIC20.69■□□□□ 0.9
PDGFRAP16234 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.69■□□□□ 0.9
PDGFRAP16234 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.69■□□□□ 0.9
PDGFRAP16234 AC006058.3-201ENST00000606217 1069 ntBASIC20.69■□□□□ 0.9
PDGFRAP16234 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.69■□□□□ 0.9
PDGFRAP16234 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
PDGFRAP16234 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.69■□□□□ 0.9
PDGFRAP16234 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
PDGFRAP16234 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFRAP16234 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFRAP16234 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFRAP16234 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
PDGFRAP16234 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDGFRAP16234 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
PDGFRAP16234 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.69■□□□□ 0.9
PDGFRAP16234 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFRAP16234 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFRAP16234 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PDGFRAP16234 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDGFRAP16234 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDGFRAP16234 KRT18P29-201ENST00000397031 1267 ntBASIC20.68■□□□□ 0.9
PDGFRAP16234 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
PDGFRAP16234 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
PDGFRAP16234 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PDGFRAP16234 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PDGFRAP16234 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.68■□□□□ 0.9
PDGFRAP16234 AC008687.6-201ENST00000596318 630 ntBASIC20.68■□□□□ 0.9
PDGFRAP16234 AC008403.3-201ENST00000598924 454 ntBASIC20.68■□□□□ 0.9
PDGFRAP16234 ITM2C-210ENST00000620962 501 ntBASIC20.68■□□□□ 0.9
PDGFRAP16234 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.68■□□□□ 0.9
PDGFRAP16234 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDGFRAP16234 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
PDGFRAP16234 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
PDGFRAP16234 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFRAP16234 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFRAP16234 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.68■□□□□ 0.9
PDGFRAP16234 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDGFRAP16234 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PDGFRAP16234 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFRAP16234 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.68■□□□□ 0.9
PDGFRAP16234 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDGFRAP16234 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.67■□□□□ 0.9
PDGFRAP16234 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.67■□□□□ 0.9
PDGFRAP16234 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDGFRAP16234 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.67■□□□□ 0.9
PDGFRAP16234 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFRAP16234 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.66■□□□□ 0.9
PDGFRAP16234 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFRAP16234 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFRAP16234 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.66■□□□□ 0.9
PDGFRAP16234 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PDGFRAP16234 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFRAP16234 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFRAP16234 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.66■□□□□ 0.9
PDGFRAP16234 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFRAP16234 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFRAP16234 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.66■□□□□ 0.9
PDGFRAP16234 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.66■□□□□ 0.9
PDGFRAP16234 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.66■□□□□ 0.9
PDGFRAP16234 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFRAP16234 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.66■□□□□ 0.9
PDGFRAP16234 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFRAP16234 TFP1-202ENST00000475455 1573 ntBASIC20.66■□□□□ 0.9
PDGFRAP16234 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PDGFRAP16234 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PDGFRAP16234 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PDGFRAP16234 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms