Protein–RNA interactions for Protein: P16070

CD44, CD44 antigen, humanhuman

Known RBP Predictions only

Length 742 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD44P16070 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CD44P16070 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CD44P16070 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CD44P16070 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.83■■□□□ 1.09
CD44P16070 SERPINA7P1-201ENST00000443077 631 ntBASIC21.83■■□□□ 1.09
CD44P16070 AC026185.1-201ENST00000445748 174 ntBASIC21.83■■□□□ 1.09
CD44P16070 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CD44P16070 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.83■■□□□ 1.09
CD44P16070 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.83■■□□□ 1.09
CD44P16070 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
CD44P16070 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
CD44P16070 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
CD44P16070 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
CD44P16070 AC018553.1-201ENST00000616682 1458 ntBASIC21.83■■□□□ 1.08
CD44P16070 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
CD44P16070 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.82■■□□□ 1.08
CD44P16070 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.82■■□□□ 1.08
CD44P16070 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CD44P16070 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
CD44P16070 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CD44P16070 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.82■■□□□ 1.08
CD44P16070 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
CD44P16070 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CD44P16070 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CD44P16070 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CD44P16070 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.82■■□□□ 1.08
CD44P16070 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.82■■□□□ 1.08
CD44P16070 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.82■■□□□ 1.08
CD44P16070 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.82■■□□□ 1.08
CD44P16070 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.82■■□□□ 1.08
CD44P16070 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CD44P16070 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CD44P16070 TNXA-203ENST00000507684 2038 ntBASIC21.82■■□□□ 1.08
CD44P16070 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CD44P16070 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.81■■□□□ 1.08
CD44P16070 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.81■■□□□ 1.08
CD44P16070 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.81■■□□□ 1.08
CD44P16070 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.81■■□□□ 1.08
CD44P16070 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.81■■□□□ 1.08
CD44P16070 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.81■■□□□ 1.08
CD44P16070 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CD44P16070 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CD44P16070 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CD44P16070 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CD44P16070 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CD44P16070 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CD44P16070 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.8■■□□□ 1.08
CD44P16070 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CD44P16070 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CD44P16070 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CD44P16070 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.8■■□□□ 1.08
CD44P16070 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.8■■□□□ 1.08
CD44P16070 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
CD44P16070 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
CD44P16070 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.8■■□□□ 1.08
CD44P16070 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
CD44P16070 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CD44P16070 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CD44P16070 AC116351.2-201ENST00000606540 1585 ntBASIC21.79■■□□□ 1.08
CD44P16070 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CD44P16070 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.79■■□□□ 1.08
CD44P16070 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.79■■□□□ 1.08
CD44P16070 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.79■■□□□ 1.08
CD44P16070 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC21.79■■□□□ 1.08
CD44P16070 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.79■■□□□ 1.08
CD44P16070 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CD44P16070 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.79■■□□□ 1.08
CD44P16070 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.79■■□□□ 1.08
CD44P16070 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.79■■□□□ 1.08
CD44P16070 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
CD44P16070 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CD44P16070 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CD44P16070 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
CD44P16070 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CD44P16070 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CD44P16070 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
CD44P16070 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.78■■□□□ 1.08
CD44P16070 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.78■■□□□ 1.08
CD44P16070 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CD44P16070 MIPEPP3-201ENST00000412105 444 ntBASIC21.78■■□□□ 1.08
CD44P16070 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.78■■□□□ 1.08
CD44P16070 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.78■■□□□ 1.08
CD44P16070 PAX6-247ENST00000638965 979 ntTSL 5 BASIC21.78■■□□□ 1.08
CD44P16070 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CD44P16070 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CD44P16070 AC004408.2-201ENST00000623613 2777 ntBASIC21.78■■□□□ 1.08
CD44P16070 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.78■■□□□ 1.08
CD44P16070 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CD44P16070 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms