Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
APOEP02649 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
APOEP02649 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
APOEP02649 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
APOEP02649 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
APOEP02649 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.64■□□□□ 0.9
APOEP02649 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.64■□□□□ 0.9
APOEP02649 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.64■□□□□ 0.9
APOEP02649 BX119927.1-201ENST00000636596 1552 ntBASIC20.64■□□□□ 0.9
APOEP02649 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
APOEP02649 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
APOEP02649 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.64■□□□□ 0.89
APOEP02649 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.64■□□□□ 0.89
APOEP02649 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.64■□□□□ 0.89
APOEP02649 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.64■□□□□ 0.89
APOEP02649 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
APOEP02649 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
APOEP02649 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.63■□□□□ 0.89
APOEP02649 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
APOEP02649 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
APOEP02649 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
APOEP02649 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.63■□□□□ 0.89
APOEP02649 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.63■□□□□ 0.89
APOEP02649 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
APOEP02649 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.63■□□□□ 0.89
APOEP02649 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.63■□□□□ 0.89
APOEP02649 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
APOEP02649 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
APOEP02649 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
APOEP02649 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.62■□□□□ 0.89
APOEP02649 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
APOEP02649 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.62■□□□□ 0.89
APOEP02649 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.62■□□□□ 0.89
APOEP02649 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
APOEP02649 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.62■□□□□ 0.89
APOEP02649 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.62■□□□□ 0.89
APOEP02649 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
APOEP02649 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
APOEP02649 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
APOEP02649 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.62■□□□□ 0.89
APOEP02649 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.62■□□□□ 0.89
APOEP02649 PRKY-204ENST00000533551 1019 ntBASIC20.62■□□□□ 0.89
APOEP02649 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.62■□□□□ 0.89
APOEP02649 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.62■□□□□ 0.89
APOEP02649 AL121829.2-201ENST00000620908 328 ntBASIC20.62■□□□□ 0.89
APOEP02649 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.62■□□□□ 0.89
APOEP02649 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
APOEP02649 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
APOEP02649 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
APOEP02649 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
APOEP02649 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
APOEP02649 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.61■□□□□ 0.89
APOEP02649 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
APOEP02649 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.61■□□□□ 0.89
APOEP02649 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
APOEP02649 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.61■□□□□ 0.89
APOEP02649 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.61■□□□□ 0.89
APOEP02649 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.61■□□□□ 0.89
APOEP02649 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
APOEP02649 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.61■□□□□ 0.89
APOEP02649 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
APOEP02649 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.6■□□□□ 0.89
APOEP02649 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.6■□□□□ 0.89
APOEP02649 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
APOEP02649 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms