Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL3A1P02461 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
COL3A1P02461 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
COL3A1P02461 MESTP1-201ENST00000404287 994 ntBASIC26.18■■□□□ 1.78
COL3A1P02461 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC26.18■■□□□ 1.78
COL3A1P02461 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL3A1P02461 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC26.18■■□□□ 1.78
COL3A1P02461 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
COL3A1P02461 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL3A1P02461 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC26.18■■□□□ 1.78
COL3A1P02461 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC26.18■■□□□ 1.78
COL3A1P02461 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL3A1P02461 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL3A1P02461 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL3A1P02461 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
COL3A1P02461 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
COL3A1P02461 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL3A1P02461 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL3A1P02461 TUBB8P6-201ENST00000436895 1288 ntBASIC26.17■■□□□ 1.78
COL3A1P02461 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC26.17■■□□□ 1.78
COL3A1P02461 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
COL3A1P02461 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC26.17■■□□□ 1.78
COL3A1P02461 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC26.17■■□□□ 1.78
COL3A1P02461 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC26.17■■□□□ 1.78
COL3A1P02461 AC026471.5-201ENST00000615068 467 ntBASIC26.17■■□□□ 1.78
COL3A1P02461 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL3A1P02461 KRT16P1-201ENST00000399124 1418 ntBASIC26.17■■□□□ 1.78
COL3A1P02461 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC26.17■■□□□ 1.78
COL3A1P02461 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
COL3A1P02461 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL3A1P02461 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC26.17■■□□□ 1.78
COL3A1P02461 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC26.17■■□□□ 1.78
COL3A1P02461 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC26.17■■□□□ 1.78
COL3A1P02461 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL3A1P02461 KSR1P1-201ENST00000446298 240 ntBASIC26.17■■□□□ 1.78
COL3A1P02461 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC26.17■■□□□ 1.78
COL3A1P02461 AC026271.3-201ENST00000571884 352 ntBASIC26.17■■□□□ 1.78
COL3A1P02461 MIR4785-201ENST00000585005 73 ntBASIC26.17■■□□□ 1.78
COL3A1P02461 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL3A1P02461 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
COL3A1P02461 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC26.16■■□□□ 1.78
COL3A1P02461 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC26.16■■□□□ 1.78
COL3A1P02461 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC26.16■■□□□ 1.78
COL3A1P02461 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
COL3A1P02461 AP002982.1-201ENST00000492365 877 ntBASIC26.16■■□□□ 1.78
COL3A1P02461 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
COL3A1P02461 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL3A1P02461 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC26.16■■□□□ 1.78
COL3A1P02461 REXO1L10P-201ENST00000615707 1290 ntBASIC26.16■■□□□ 1.78
COL3A1P02461 REXO1L12P-201ENST00000622156 912 ntBASIC26.16■■□□□ 1.78
COL3A1P02461 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
COL3A1P02461 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
COL3A1P02461 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC26.15■■□□□ 1.78
COL3A1P02461 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
COL3A1P02461 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC26.15■■□□□ 1.78
COL3A1P02461 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC26.15■■□□□ 1.78
COL3A1P02461 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
COL3A1P02461 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
COL3A1P02461 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC26.15■■□□□ 1.78
COL3A1P02461 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
COL3A1P02461 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
COL3A1P02461 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
COL3A1P02461 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC26.15■■□□□ 1.78
COL3A1P02461 AC004980.1-204ENST00000429707 299 ntBASIC26.15■■□□□ 1.78
COL3A1P02461 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC26.15■■□□□ 1.78
COL3A1P02461 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC26.15■■□□□ 1.78
COL3A1P02461 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC26.15■■□□□ 1.78
COL3A1P02461 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
COL3A1P02461 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL3A1P02461 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL3A1P02461 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL3A1P02461 AC112907.3-201ENST00000577781 2400 ntBASIC26.14■■□□□ 1.78
COL3A1P02461 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL3A1P02461 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL3A1P02461 KRT8P8-201ENST00000434750 1448 ntBASIC26.14■■□□□ 1.78
COL3A1P02461 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
COL3A1P02461 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL3A1P02461 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL3A1P02461 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
COL3A1P02461 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC26.14■■□□□ 1.78
COL3A1P02461 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC26.14■■□□□ 1.78
COL3A1P02461 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC26.14■■□□□ 1.78
COL3A1P02461 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
COL3A1P02461 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
COL3A1P02461 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
COL3A1P02461 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.77
COL3A1P02461 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
COL3A1P02461 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC26.13■■□□□ 1.77
COL3A1P02461 LBX2-AS1-202ENST00000603175 2083 ntBASIC26.13■■□□□ 1.77
COL3A1P02461 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
COL3A1P02461 AP001412.1-201ENST00000608405 714 ntBASIC26.13■■□□□ 1.77
COL3A1P02461 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
COL3A1P02461 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
COL3A1P02461 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
COL3A1P02461 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
COL3A1P02461 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC26.13■■□□□ 1.77
COL3A1P02461 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
COL3A1P02461 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC26.13■■□□□ 1.77
COL3A1P02461 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
COL3A1P02461 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms