Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.98■□□□□ 0.63
LDLRP01130 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
LDLRP01130 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDLRP01130 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LDLRP01130 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDLRP01130 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDLRP01130 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.97■□□□□ 0.63
LDLRP01130 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDLRP01130 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
LDLRP01130 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.97■□□□□ 0.63
LDLRP01130 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.97■□□□□ 0.63
LDLRP01130 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.97■□□□□ 0.63
LDLRP01130 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.97■□□□□ 0.63
LDLRP01130 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDLRP01130 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LDLRP01130 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDLRP01130 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDLRP01130 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDLRP01130 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDLRP01130 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
LDLRP01130 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
LDLRP01130 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
LDLRP01130 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
LDLRP01130 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LDLRP01130 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.96■□□□□ 0.63
LDLRP01130 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
LDLRP01130 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.96■□□□□ 0.63
LDLRP01130 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.96■□□□□ 0.63
LDLRP01130 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
LDLRP01130 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDLRP01130 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.95■□□□□ 0.62
LDLRP01130 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
LDLRP01130 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.95■□□□□ 0.62
LDLRP01130 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.95■□□□□ 0.62
LDLRP01130 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.95■□□□□ 0.62
LDLRP01130 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.95■□□□□ 0.62
LDLRP01130 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.95■□□□□ 0.62
LDLRP01130 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.95■□□□□ 0.62
LDLRP01130 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.95■□□□□ 0.62
LDLRP01130 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
LDLRP01130 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.95■□□□□ 0.62
LDLRP01130 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 TMEM179-206ENST00000616017 1645 ntBASIC18.95■□□□□ 0.62
LDLRP01130 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.95■□□□□ 0.62
LDLRP01130 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.95■□□□□ 0.62
LDLRP01130 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
LDLRP01130 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.95■□□□□ 0.62
LDLRP01130 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.95■□□□□ 0.62
LDLRP01130 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDLRP01130 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.94■□□□□ 0.62
LDLRP01130 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.94■□□□□ 0.62
LDLRP01130 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.94■□□□□ 0.62
LDLRP01130 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.94■□□□□ 0.62
LDLRP01130 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
LDLRP01130 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.94■□□□□ 0.62
LDLRP01130 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.94■□□□□ 0.62
LDLRP01130 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LDLRP01130 AC008550.1-201ENST00000511500 884 ntBASIC18.94■□□□□ 0.62
LDLRP01130 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms