Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LDB3O75112 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.57■□□□□ 0.56
LDB3O75112 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LDB3O75112 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LDB3O75112 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LDB3O75112 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LDB3O75112 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LDB3O75112 TFP1-202ENST00000475455 1573 ntBASIC18.56■□□□□ 0.56
LDB3O75112 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LDB3O75112 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
LDB3O75112 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.56■□□□□ 0.56
LDB3O75112 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.56■□□□□ 0.56
LDB3O75112 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.56■□□□□ 0.56
LDB3O75112 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.56■□□□□ 0.56
LDB3O75112 AL121829.2-201ENST00000620908 328 ntBASIC18.56■□□□□ 0.56
LDB3O75112 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LDB3O75112 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LDB3O75112 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LDB3O75112 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.56■□□□□ 0.56
LDB3O75112 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.56■□□□□ 0.56
LDB3O75112 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LDB3O75112 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.56■□□□□ 0.56
LDB3O75112 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LDB3O75112 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LDB3O75112 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LDB3O75112 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LDB3O75112 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
LDB3O75112 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LDB3O75112 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
LDB3O75112 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LDB3O75112 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.55■□□□□ 0.56
LDB3O75112 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LDB3O75112 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LDB3O75112 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LDB3O75112 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LDB3O75112 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
LDB3O75112 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.55■□□□□ 0.56
LDB3O75112 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LDB3O75112 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.55■□□□□ 0.56
LDB3O75112 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.55■□□□□ 0.56
LDB3O75112 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.55■□□□□ 0.56
LDB3O75112 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LDB3O75112 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LDB3O75112 TMEM179-206ENST00000616017 1645 ntBASIC18.55■□□□□ 0.56
LDB3O75112 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
LDB3O75112 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
LDB3O75112 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
LDB3O75112 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LDB3O75112 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LDB3O75112 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LDB3O75112 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.55■□□□□ 0.56
LDB3O75112 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.55■□□□□ 0.56
LDB3O75112 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.55■□□□□ 0.56
LDB3O75112 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
LDB3O75112 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB3O75112 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
LDB3O75112 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.54■□□□□ 0.56
LDB3O75112 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LDB3O75112 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB3O75112 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.54■□□□□ 0.56
LDB3O75112 KRT18P29-201ENST00000397031 1267 ntBASIC18.54■□□□□ 0.56
LDB3O75112 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB3O75112 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.54■□□□□ 0.56
LDB3O75112 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LDB3O75112 MTDHP1-201ENST00000605323 784 ntBASIC18.54■□□□□ 0.56
LDB3O75112 ITM2C-210ENST00000620962 501 ntBASIC18.54■□□□□ 0.56
LDB3O75112 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.54■□□□□ 0.56
LDB3O75112 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB3O75112 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB3O75112 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LDB3O75112 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LDB3O75112 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LDB3O75112 AC009237.14-201ENST00000609975 1594 ntBASIC18.54■□□□□ 0.56
LDB3O75112 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.54■□□□□ 0.56
LDB3O75112 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.54■□□□□ 0.56
LDB3O75112 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
LDB3O75112 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
LDB3O75112 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
LDB3O75112 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB3O75112 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LDB3O75112 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.53■□□□□ 0.56
LDB3O75112 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB3O75112 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB3O75112 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.53■□□□□ 0.56
LDB3O75112 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB3O75112 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.53■□□□□ 0.56
LDB3O75112 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
LDB3O75112 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB3O75112 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LDB3O75112 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB3O75112 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB3O75112 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LDB3O75112 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.53■□□□□ 0.56
LDB3O75112 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.52■□□□□ 0.56
LDB3O75112 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.52■□□□□ 0.56
LDB3O75112 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms