Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
SSX4O60224 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SSX4O60224 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SSX4O60224 AC003102.1-202ENST00000563394 1796 ntBASIC17.82■□□□□ 0.44
SSX4O60224 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 POU5F1P4-201ENST00000413175 1085 ntBASIC17.82■□□□□ 0.44
SSX4O60224 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.82■□□□□ 0.44
SSX4O60224 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.82■□□□□ 0.44
SSX4O60224 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
SSX4O60224 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC17.82■□□□□ 0.44
SSX4O60224 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SSX4O60224 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SSX4O60224 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.81■□□□□ 0.44
SSX4O60224 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SSX4O60224 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.81■□□□□ 0.44
SSX4O60224 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SSX4O60224 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SSX4O60224 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.81■□□□□ 0.44
SSX4O60224 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.81■□□□□ 0.44
SSX4O60224 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SSX4O60224 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SSX4O60224 AC093787.1-201ENST00000450396 207 ntBASIC17.81■□□□□ 0.44
SSX4O60224 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.81■□□□□ 0.44
SSX4O60224 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.81■□□□□ 0.44
SSX4O60224 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.81■□□□□ 0.44
SSX4O60224 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.81■□□□□ 0.44
SSX4O60224 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SSX4O60224 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SSX4O60224 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.81■□□□□ 0.44
SSX4O60224 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SSX4O60224 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
SSX4O60224 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SSX4O60224 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SSX4O60224 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SSX4O60224 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SSX4O60224 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SSX4O60224 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SSX4O60224 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC17.8■□□□□ 0.44
SSX4O60224 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SSX4O60224 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SSX4O60224 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SSX4O60224 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SSX4O60224 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SSX4O60224 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SSX4O60224 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SSX4O60224 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SSX4O60224 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.8■□□□□ 0.44
SSX4O60224 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
SSX4O60224 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SSX4O60224 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.8■□□□□ 0.44
SSX4O60224 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.8■□□□□ 0.44
SSX4O60224 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SSX4O60224 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.8■□□□□ 0.44
SSX4O60224 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.8■□□□□ 0.44
SSX4O60224 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.8■□□□□ 0.44
SSX4O60224 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
SSX4O60224 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SSX4O60224 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SSX4O60224 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
SSX4O60224 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.8■□□□□ 0.44
SSX4O60224 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.8■□□□□ 0.44
SSX4O60224 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SSX4O60224 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SSX4O60224 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SSX4O60224 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
SSX4O60224 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SSX4O60224 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SSX4O60224 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SSX4O60224 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SSX4O60224 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SSX4O60224 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.79■□□□□ 0.44
SSX4O60224 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SSX4O60224 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SSX4O60224 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.79■□□□□ 0.44
SSX4O60224 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SSX4O60224 BX276092.2-201ENST00000417668 665 ntBASIC17.79■□□□□ 0.44
SSX4O60224 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.79■□□□□ 0.44
SSX4O60224 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.79■□□□□ 0.44
SSX4O60224 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SSX4O60224 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.79■□□□□ 0.44
SSX4O60224 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.79■□□□□ 0.44
SSX4O60224 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SSX4O60224 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SSX4O60224 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
SSX4O60224 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.79■□□□□ 0.44
SSX4O60224 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.79■□□□□ 0.44
SSX4O60224 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.79■□□□□ 0.44
SSX4O60224 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms