Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SOX1O00570 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX1O00570 TSPY12P-201ENST00000421279 868 ntBASIC21.09■□□□□ 0.97
SOX1O00570 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC21.09■□□□□ 0.97
SOX1O00570 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.09■□□□□ 0.97
SOX1O00570 AP003041.3-201ENST00000527151 707 ntBASIC21.09■□□□□ 0.97
SOX1O00570 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC21.09■□□□□ 0.97
SOX1O00570 AP002414.4-201ENST00000589764 1148 ntBASIC21.09■□□□□ 0.97
SOX1O00570 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.09■□□□□ 0.97
SOX1O00570 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.09■□□□□ 0.97
SOX1O00570 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX1O00570 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.09■□□□□ 0.97
SOX1O00570 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SOX1O00570 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SOX1O00570 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SOX1O00570 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.08■□□□□ 0.97
SOX1O00570 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SOX1O00570 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SOX1O00570 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.08■□□□□ 0.97
SOX1O00570 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.08■□□□□ 0.97
SOX1O00570 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC21.08■□□□□ 0.97
SOX1O00570 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.08■□□□□ 0.97
SOX1O00570 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
SOX1O00570 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.08■□□□□ 0.97
SOX1O00570 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.08■□□□□ 0.97
SOX1O00570 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SOX1O00570 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SOX1O00570 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SOX1O00570 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX1O00570 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SOX1O00570 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX1O00570 HBZP1-201ENST00000354915 429 ntBASIC21.07■□□□□ 0.96
SOX1O00570 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX1O00570 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX1O00570 HLA-G-202ENST00000376815 851 ntBASIC21.07■□□□□ 0.96
SOX1O00570 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX1O00570 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX1O00570 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.07■□□□□ 0.96
SOX1O00570 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC21.07■□□□□ 0.96
SOX1O00570 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.07■□□□□ 0.96
SOX1O00570 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC21.07■□□□□ 0.96
SOX1O00570 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.07■□□□□ 0.96
SOX1O00570 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.07■□□□□ 0.96
SOX1O00570 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SOX1O00570 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX1O00570 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX1O00570 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX1O00570 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SOX1O00570 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX1O00570 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX1O00570 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.06■□□□□ 0.96
SOX1O00570 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX1O00570 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SOX1O00570 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX1O00570 BX276092.5-203ENST00000456199 560 ntBASIC21.06■□□□□ 0.96
SOX1O00570 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC21.06■□□□□ 0.96
SOX1O00570 AC091304.2-201ENST00000564639 760 ntBASIC21.06■□□□□ 0.96
SOX1O00570 AL121672.3-201ENST00000608644 468 ntBASIC21.06■□□□□ 0.96
SOX1O00570 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SOX1O00570 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.06■□□□□ 0.96
SOX1O00570 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SOX1O00570 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SOX1O00570 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SOX1O00570 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
SOX1O00570 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SOX1O00570 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.05■□□□□ 0.96
SOX1O00570 KRT8P36-201ENST00000489121 1440 ntBASIC21.05■□□□□ 0.96
SOX1O00570 PTBP1P-201ENST00000554374 1601 ntBASIC21.05■□□□□ 0.96
SOX1O00570 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX1O00570 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
SOX1O00570 AP000523.1-201ENST00000398242 1049 ntBASIC21.05■□□□□ 0.96
SOX1O00570 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC21.05■□□□□ 0.96
SOX1O00570 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.05■□□□□ 0.96
SOX1O00570 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
SOX1O00570 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC21.05■□□□□ 0.96
SOX1O00570 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC21.05■□□□□ 0.96
SOX1O00570 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX1O00570 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SOX1O00570 HLA-A-209ENST00000638375 975 ntBASIC21.05■□□□□ 0.96
SOX1O00570 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.05■□□□□ 0.96
SOX1O00570 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX1O00570 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SOX1O00570 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SOX1O00570 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.05■□□□□ 0.96
SOX1O00570 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
SOX1O00570 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SOX1O00570 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SOX1O00570 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SOX1O00570 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SOX1O00570 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SOX1O00570 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SOX1O00570 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC21.04■□□□□ 0.96
SOX1O00570 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SOX1O00570 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC21.04■□□□□ 0.96
SOX1O00570 PENK-208ENST00000523051 772 ntTSL 5 BASIC21.04■□□□□ 0.96
SOX1O00570 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SOX1O00570 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.04■□□□□ 0.96
SOX1O00570 AC011498.5-201ENST00000592027 486 ntBASIC21.04■□□□□ 0.96
SOX1O00570 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SOX1O00570 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms