Protein–RNA interactions for Protein: A0A096LP49

CCDC187, Coiled-coil domain-containing protein 187, humanhuman

Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187A0A096LP49 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 BX664615.1-201ENST00000443558 458 ntBASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC187A0A096LP49 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 AK4P3-201ENST00000418260 669 ntBASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC187A0A096LP49 FP700111.2-201ENST00000619190 1892 ntBASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 AP000692.2-201ENST00000608391 879 ntBASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 FAM87A-204ENST00000613235 858 ntBASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC187A0A096LP49 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 HMGA1P5-201ENST00000412453 271 ntBASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 AC011298.2-201ENST00000617989 482 ntBASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 AC130371.2-201ENST00000619443 611 ntBASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 FEM1AP4-201ENST00000443167 1987 ntBASIC18.7■□□□□ 0.58
CCDC187A0A096LP49 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 RCC2P6-201ENST00000526625 1557 ntBASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC187A0A096LP49 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms