Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC26.57■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AC087289.5-201ENST00000586076 3175 ntBASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 C2orf69P4-201ENST00000565394 541 ntBASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AL589743.5-201ENST00000616611 1050 ntBASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 GAS7-202ENST00000396115 929 ntTSL 5 BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AC133561.5-201ENST00000635547 218 ntBASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AC124283.5-201ENST00000624661 1809 ntBASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AC007952.6-201ENST00000573168 2673 ntBASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AC003957.1-201ENST00000625108 2673 ntBASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 MFF-205ENST00000354503 1085 ntTSL 2 BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AC073648.6-201ENST00000641589 218 ntBASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 PGM5P4-201ENST00000421970 445 ntBASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 SERP1-205ENST00000487153 657 ntTSL 4 BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC26.53■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC26.52■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 AL359736.2-201ENST00000621992 437 ntBASIC26.52■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC26.51■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.84
SENP3-EIF4A1A0A087X0R7 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 MOK-233ENST00000524214 1539 ntTSL 2 BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC26.51■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms