Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC5.79□□□□□ -1.48
COL6A3P12111 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
COL6A3P12111 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 ZC3H6-201ENST00000343936 11539 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
COL6A3P12111 CNTN4-205ENST00000427331 4980 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
COL6A3P12111 AL133243.4-201ENST00000623116 3109 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 SNORD46.1-201ENST00000364139 104 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.79□□□□□ -1.48
COL6A3P12111 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC5.79□□□□□ -1.48
COL6A3P12111 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.79□□□□□ -1.48
COL6A3P12111 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.79□□□□□ -1.48
COL6A3P12111 AC010618.1-201ENST00000469924 477 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.79□□□□□ -1.48
COL6A3P12111 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.79□□□□□ -1.48
COL6A3P12111 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
COL6A3P12111 AC006130.2-201ENST00000586202 326 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.79□□□□□ -1.48
COL6A3P12111 AC112200.1-201ENST00000625015 234 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.79□□□□□ -1.48
COL6A3P12111 ZNF484-203ENST00000395505 3960 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
COL6A3P12111 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A3P12111 ZNF667-202ENST00000504904 4390 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
COL6A3P12111 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.79□□□□□ -1.48
COL6A3P12111 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 CTSC-203ENST00000524463 6125 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
COL6A3P12111 ANKRD26-202ENST00000436985 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 MIGA1-201ENST00000370791 5288 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 SCN5A-208ENST00000450102 6284 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 GAPDHP15-201ENST00000398586 975 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 SNORA11.1-201ENST00000408133 129 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A3P12111 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.79□□□□□ -1.48
COL6A3P12111 AC092106.1-201ENST00000444291 373 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 RPL36AP15-201ENST00000444514 266 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 AC109327.1-201ENST00000471666 403 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 AC092824.1-201ENST00000483524 576 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC5.79□□□□□ -1.48
COL6A3P12111 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.79□□□□□ -1.48
COL6A3P12111 AP000769.2-201ENST00000602344 396 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 AC020765.1-201ENST00000604296 328 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.79□□□□□ -1.48
COL6A3P12111 AC034229.5-201ENST00000624258 185 ntBASIC5.79□□□□□ -1.48
COL6A3P12111 KIAA1671-201ENST00000358431 10490 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 ANO3-201ENST00000256737 6642 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
COL6A3P12111 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC5.79□□□□□ -1.48
COL6A3P12111 LPIN2-201ENST00000261596 6229 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL6A3P12111 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
COL6A3P12111 UGT2B27P-201ENST00000505092 1620 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 CLCN4-202ENST00000380833 6750 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 KANK1-205ENST00000382297 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 ARID1B-210ENST00000635849 5830 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
COL6A3P12111 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
COL6A3P12111 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
COL6A3P12111 SYNE1-206ENST00000367253 5189 ntTSL 5 BASIC5.78□□□□□ -1.48
COL6A3P12111 ZNF8-201ENST00000621650 9128 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.78□□□□□ -1.48
COL6A3P12111 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.78□□□□□ -1.48
COL6A3P12111 AC023141.8-201ENST00000442554 208 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 Z95327.1-201ENST00000446082 482 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 snoU13.1-201ENST00000459157 104 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 AC009127.1-201ENST00000467090 155 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 MED28P5-201ENST00000528254 438 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.78□□□□□ -1.48
COL6A3P12111 AL627230.1-201ENST00000613077 211 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 AL591926.8-201ENST00000616876 211 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 AC034229.6-201ENST00000623704 224 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC5.78□□□□□ -1.48
COL6A3P12111 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
COL6A3P12111 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 MASP1-203ENST00000337774 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 AL591848.4-201ENST00000567832 3472 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.78□□□□□ -1.48
COL6A3P12111 AL359265.2-201ENST00000434367 631 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.78□□□□□ -1.48
COL6A3P12111 RPSAP51-201ENST00000497462 645 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.78□□□□□ -1.48
COL6A3P12111 AL359704.2-201ENST00000604335 521 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.78□□□□□ -1.48
COL6A3P12111 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.78□□□□□ -1.48
COL6A3P12111 TMEM178B-202ENST00000565468 10558 ntAPPRIS P2 TSL 5 BASIC5.78□□□□□ -1.48
COL6A3P12111 TMEM178B-203ENST00000610315 10552 ntAPPRIS ALT1 TSL 5 BASIC5.78□□□□□ -1.48
COL6A3P12111 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC5.78□□□□□ -1.48
COL6A3P12111 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 LAMA3-203ENST00000399516 9834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC5.78□□□□□ -1.48
COL6A3P12111 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.78□□□□□ -1.48
COL6A3P12111 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL6A3P12111 PIGN-230ENST00000638977 4601 ntTSL 5 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms