RNA–Protein interactions for RNA: ENST00000511895.1

LINC01088-208, Transcript of long intergenic non-protein coding RNA 1088, humanhuman

TSL 2 BASIC

Gene LINC01088, Length 795 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01088-208ENST00000511895 AEBP2Q6ZN18 517 aaPredicted RBP29.83■■■□□ 2.37
LINC01088-208ENST00000511895 CHIC1Q5VXU3 224 aa29.24■■■□□ 2.27
LINC01088-208ENST00000511895 PHF23Q9BUL5 403 aaPredicted RBP25.7■■□□□ 1.7
LINC01088-208ENST00000511895 SENP3Q9H4L4 574 aaPredicted RBP25.34■■□□□ 1.65
LINC01088-208ENST00000511895 PLPPR3Q6T4P5 718 aa23.82■■□□□ 1.4
LINC01088-208ENST00000511895 FOXD1Q16676 465 aa23.49■■□□□ 1.35
LINC01088-208ENST00000511895 ADRA2BP18089 450 aa22.69■■□□□ 1.22
LINC01088-208ENST00000511895 PPP6R1Q9UPN7 881 aa22.66■■□□□ 1.22
LINC01088-208ENST00000511895 PIAS4Q8N2W9 510 aaPredicted RBP22.23■■□□□ 1.15
LINC01088-208ENST00000511895 MSH5O43196 834 aa21.65■■□□□ 1.06
LINC01088-208ENST00000511895 PPP4R3CPQ6ZMV5 832 aa21■□□□□ 0.95
LINC01088-208ENST00000511895 SCAF1Q9H7N4 1312 aaKnown RBP20.79■□□□□ 0.92
LINC01088-208ENST00000511895 KCNA4P22459 653 aa20.61■□□□□ 0.89
LINC01088-208ENST00000511895 MAPK8IP2Q13387 824 aaPredicted RBP20.56■□□□□ 0.88
LINC01088-208ENST00000511895 NCBP3Q53F19 620 aaKnown RBP20.51■□□□□ 0.87
LINC01088-208ENST00000511895 CNKSR2Q8WXI2 1034 aa20.39■□□□□ 0.85
LINC01088-208ENST00000511895 DMRT2Q9Y5R5 561 aa20.22■□□□□ 0.83
LINC01088-208ENST00000511895 NPM3O75607 178 aaKnown RBP20.16■□□□□ 0.82
LINC01088-208ENST00000511895 RNF216Q9NWF9 866 aaPredicted RBP19.95■□□□□ 0.78
LINC01088-208ENST00000511895 HOXD11P31277 338 aaPredicted RBP19.81■□□□□ 0.76
LINC01088-208ENST00000511895 SLC4A1APQ9BWU0 796 aaKnown RBP19.68■□□□□ 0.74
LINC01088-208ENST00000511895 POTEDQ86YR6 584 aa19.55■□□□□ 0.72
LINC01088-208ENST00000511895 DCAF8L1A6NGE4 600 aa19.49■□□□□ 0.71
LINC01088-208ENST00000511895 DNAJC5BQ9UF47 199 aa19.44■□□□□ 0.7
LINC01088-208ENST00000511895 EHMT2Q96KQ7 1210 aa19.27■□□□□ 0.68
LINC01088-208ENST00000511895 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19■□□□□ 0.63
LINC01088-208ENST00000511895 SLC4A2P04920 1241 aa18.99■□□□□ 0.63
LINC01088-208ENST00000511895 FOXD4L1Q9NU39 408 aa18.95■□□□□ 0.62
LINC01088-208ENST00000511895 ZBTB22O15209 634 aa18.93■□□□□ 0.62
LINC01088-208ENST00000511895 CSRNP3Q8WYN3 585 aa18.91■□□□□ 0.62
LINC01088-208ENST00000511895 MYCNP04198 464 aaPredicted RBP18.65■□□□□ 0.58
LINC01088-208ENST00000511895 U3KPZ7 1027 aaPredicted RBP18.62■□□□□ 0.57
LINC01088-208ENST00000511895 RNF39Q9H2S5 420 aa18.53■□□□□ 0.56
LINC01088-208ENST00000511895 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.46■□□□□ 0.55
LINC01088-208ENST00000511895 HNRNPUL2Q1KMD3 747 aaKnown RBP18.46■□□□□ 0.55
LINC01088-208ENST00000511895 SAMD1Q6SPF0 538 aaPredicted RBP18.39■□□□□ 0.53
LINC01088-208ENST00000511895 C1QBPQ07021 282 aaKnown RBP18.33■□□□□ 0.52
LINC01088-208ENST00000511895 APLP2Q06481 763 aa18.27■□□□□ 0.52
LINC01088-208ENST00000511895 ATXN8OSP0DMR3 200 aa18.25■□□□□ 0.51
LINC01088-208ENST00000511895 ATF5Q9Y2D1 282 aaPredicted RBP18.12■□□□□ 0.49
LINC01088-208ENST00000511895 SPINK5Q9NQ38 1064 aaPredicted RBP18.1■□□□□ 0.49
LINC01088-208ENST00000511895 CAPN15O75808 1086 aa18.09■□□□□ 0.49
LINC01088-208ENST00000511895 CACNB1Q02641 598 aaPredicted RBP18.08■□□□□ 0.48
LINC01088-208ENST00000511895 TRHP20396 242 aaPredicted RBP18.03■□□□□ 0.48
LINC01088-208ENST00000511895 ZNF219Q9P2Y4 722 aaPredicted RBP17.98■□□□□ 0.47
LINC01088-208ENST00000511895 ABCB7O75027 752 aa17.75■□□□□ 0.43
LINC01088-208ENST00000511895 POLA2Q14181 598 aa17.71■□□□□ 0.43
LINC01088-208ENST00000511895 DSG3P32926 999 aa17.67■□□□□ 0.42
LINC01088-208ENST00000511895 FBLN2P98095 1184 aa17.42■□□□□ 0.38
LINC01088-208ENST00000511895 ZBTB12Q9Y330 459 aaPredicted RBP17.42■□□□□ 0.38
LINC01088-208ENST00000511895 MKRN4PQ13434 485 aaPredicted RBP17.32■□□□□ 0.36
LINC01088-208ENST00000511895 FKBP8Q14318 412 aa17.16■□□□□ 0.34
LINC01088-208ENST00000511895 OSCARQ8IYS5 282 aa17.11■□□□□ 0.33
LINC01088-208ENST00000511895 SPDYE4A6NLX3 237 aa17.04■□□□□ 0.32
LINC01088-208ENST00000511895 SPDYE2BA6NHP3 402 aa16.94■□□□□ 0.3
LINC01088-208ENST00000511895 SPDYE6P0CI01 402 aa16.94■□□□□ 0.3
LINC01088-208ENST00000511895 SPDYE2Q495Y8 402 aa16.94■□□□□ 0.3
LINC01088-208ENST00000511895 ZNF692Q9BU19 519 aaPredicted RBP16.94■□□□□ 0.3
LINC01088-208ENST00000511895 RBM42Q9BTD8 480 aaKnown RBP16.88■□□□□ 0.29
LINC01088-208ENST00000511895 SSUH2Q9Y2M2 353 aa16.78■□□□□ 0.28
LINC01088-208ENST00000511895 PABPN1Q86U42 306 aaKnown RBP eCLIP16.7■□□□□ 0.26
LINC01088-208ENST00000511895 AKT1S1Q96B36 256 aa16.67■□□□□ 0.26
LINC01088-208ENST00000511895 PROM2Q8N271 834 aa16.66■□□□□ 0.26
LINC01088-208ENST00000511895 REM2Q8IYK8 340 aaPredicted RBP16.52■□□□□ 0.24
LINC01088-208ENST00000511895 FBXO3Q9UK99 471 aa16.52■□□□□ 0.24
LINC01088-208ENST00000511895 SPDYE1Q8NFV5 336 aaPredicted RBP16.44■□□□□ 0.22
LINC01088-208ENST00000511895 STAG3Q9UJ98 1225 aa16.44■□□□□ 0.22
LINC01088-208ENST00000511895 CLEC11AQ9Y240 323 aa16.42■□□□□ 0.22
LINC01088-208ENST00000511895 PITPNM1O00562 1244 aa16.33■□□□□ 0.2
LINC01088-208ENST00000511895 VASPP50552 380 aaPredicted RBP16.27■□□□□ 0.2
LINC01088-208ENST00000511895 PRR29P0C7W0 189 aa16.26■□□□□ 0.19
LINC01088-208ENST00000511895 MIER1Q8N108 512 aa16.19■□□□□ 0.18
LINC01088-208ENST00000511895 PLCD3Q8N3E9 789 aa16.19■□□□□ 0.18
LINC01088-208ENST00000511895 CHRDL2Q6WN34 429 aa16.14■□□□□ 0.17
LINC01088-208ENST00000511895 PLEKHG5O94827 1062 aa16.13■□□□□ 0.17
LINC01088-208ENST00000511895 KLHL34Q8N239 644 aa16.06■□□□□ 0.16
LINC01088-208ENST00000511895 IFNLR1Q8IU57 520 aaPredicted RBP16.03■□□□□ 0.16
LINC01088-208ENST00000511895 CREBZFQ9NS37 354 aa16.01■□□□□ 0.15
LINC01088-208ENST00000511895 CHADLQ6NUI6 762 aa15.98■□□□□ 0.15
LINC01088-208ENST00000511895 FXR2P51116 673 aaKnown RBP eCLIP15.97■□□□□ 0.15
LINC01088-208ENST00000511895 ZBTB47Q9UFB7 747 aaPredicted RBP15.97■□□□□ 0.15
LINC01088-208ENST00000511895 PRKAR2AP13861 404 aaKnown RBP15.95■□□□□ 0.14
LINC01088-208ENST00000511895 PIP4P2Q8N4L2 257 aa15.94■□□□□ 0.14
LINC01088-208ENST00000511895 SPOCK2Q92563 424 aa15.87■□□□□ 0.13
LINC01088-208ENST00000511895 NPM1P06748 294 aaKnown RBP eCLIP15.81■□□□□ 0.12
LINC01088-208ENST00000511895 MNX1P50219 401 aaPredicted RBP15.81■□□□□ 0.12
LINC01088-208ENST00000511895 FARP1Q9Y4F1 1045 aaPredicted RBP15.81■□□□□ 0.12
LINC01088-208ENST00000511895 AMER1Q5JTC6 1135 aaPredicted RBP15.78■□□□□ 0.12
LINC01088-208ENST00000511895 RTN4Q9NQC3 1192 aaKnown RBP15.72■□□□□ 0.11
LINC01088-208ENST00000511895 NUBP1P53384 320 aa15.68■□□□□ 0.1
LINC01088-208ENST00000511895 CIZ1Q9ULV3 898 aaPredicted RBP15.66■□□□□ 0.1
LINC01088-208ENST00000511895 DCAF8Q5TAQ9 597 aa15.63■□□□□ 0.09
LINC01088-208ENST00000511895 RASEFQ8IZ41 740 aa15.62■□□□□ 0.09
LINC01088-208ENST00000511895 FAM212AQ96EL1 285 aa15.62■□□□□ 0.09
LINC01088-208ENST00000511895 GSE1Q14687 1217 aa15.58■□□□□ 0.08
LINC01088-208ENST00000511895 TSPYL2Q9H2G4 693 aaPredicted RBP15.57■□□□□ 0.08
LINC01088-208ENST00000511895 PAK3O75914 559 aaPredicted RBP15.55■□□□□ 0.08
LINC01088-208ENST00000511895 POTEHQ6S545 545 aa15.53■□□□□ 0.08
LINC01088-208ENST00000511895 PKD2Q13563 968 aa15.52■□□□□ 0.08
LINC01088-208ENST00000511895 CD44P16070 742 aaKnown RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms