RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 NISCHQ9Y2I1 1504 aa15.18■□□□□ 0.02
SYNE1-206ENST00000367253 DCAF8L2P0C7V8 631 aa15.16■□□□□ 0.02
SYNE1-206ENST00000367253 MYT1Q01538 1121 aa14.64□□□□□ -0.07
SYNE1-206ENST00000367253 FAM9AQ8IZU1 332 aaPredicted RBP14.62□□□□□ -0.07
SYNE1-206ENST00000367253 PELP1Q8IZL8 1130 aaKnown RBP14.43□□□□□ -0.1
SYNE1-206ENST00000367253 TTBK1Q5TCY1 1321 aaPredicted RBP13.91□□□□□ -0.18
SYNE1-206ENST00000367253 ERICH6Q7L0X2 663 aa13.78□□□□□ -0.2
SYNE1-206ENST00000367253 APLP2Q06481 763 aa13.55□□□□□ -0.24
SYNE1-206ENST00000367253 MYT1LQ9UL68 1186 aa13.37□□□□□ -0.27
SYNE1-206ENST00000367253 SLC24A1O60721 1099 aa13.34□□□□□ -0.27
SYNE1-206ENST00000367253 RANGAP1P46060 587 aaPredicted RBP13.23□□□□□ -0.29
SYNE1-206ENST00000367253 CCER1Q8TC90 406 aaPredicted RBP13.17□□□□□ -0.3
SYNE1-206ENST00000367253 SUPT5HO00267 1087 aaKnown RBP13.1□□□□□ -0.31
SYNE1-206ENST00000367253 ATP1B4Q9UN42 357 aaPredicted RBP13.09□□□□□ -0.31
SYNE1-206ENST00000367253 CENPBP07199 599 aaPredicted RBP13.03□□□□□ -0.32
SYNE1-206ENST00000367253 CCDC180Q9P1Z9 1646 aa12.99□□□□□ -0.33
SYNE1-206ENST00000367253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.98□□□□□ -0.33
SYNE1-206ENST00000367253 HNRNPUL2Q1KMD3 747 aaKnown RBP12.98□□□□□ -0.33
SYNE1-206ENST00000367253 SHROOM4Q9ULL8 1493 aa12.96□□□□□ -0.34
SYNE1-206ENST00000367253 EHMT2Q96KQ7 1210 aa12.92□□□□□ -0.34
SYNE1-206ENST00000367253 ESF1Q9H501 851 aaKnown RBP12.84□□□□□ -0.35
SYNE1-206ENST00000367253 YTHDC1Q96MU7 727 aaKnown RBP12.82□□□□□ -0.36
SYNE1-206ENST00000367253 NPM1P06748 294 aaKnown RBP eCLIP12.77□□□□□ -0.37
SYNE1-206ENST00000367253 EIF5BO60841 1220 aaKnown RBP12.75□□□□□ -0.37
SYNE1-206ENST00000367253 ABCC9O60706 1549 aa12.71□□□□□ -0.37
SYNE1-206ENST00000367253 NEFLP07196 543 aa12.7□□□□□ -0.38
SYNE1-206ENST00000367253 GLIPR1L2Q4G1C9 344 aa12.69□□□□□ -0.38
SYNE1-206ENST00000367253 CHIC1Q5VXU3 224 aa12.68□□□□□ -0.38
SYNE1-206ENST00000367253 ZCCHC6Q5VYS8 1495 aaKnown RBP12.67□□□□□ -0.38
SYNE1-206ENST00000367253 ZEB1P37275 1124 aaPredicted RBP12.65□□□□□ -0.38
SYNE1-206ENST00000367253 FBLN2P98095 1184 aa12.6□□□□□ -0.39
SYNE1-206ENST00000367253 BCANQ96GW7 911 aa12.6□□□□□ -0.39
SYNE1-206ENST00000367253 PCGF6Q9BYE7 350 aa12.58□□□□□ -0.4
SYNE1-206ENST00000367253 UBTFP17480 764 aaKnown RBP12.57□□□□□ -0.4
SYNE1-206ENST00000367253 POLR3GLQ9BT43 218 aa12.55□□□□□ -0.4
SYNE1-206ENST00000367253 AEBP2Q6ZN18 517 aaPredicted RBP12.54□□□□□ -0.4
SYNE1-206ENST00000367253 SLC4A1APQ9BWU0 796 aaKnown RBP12.48□□□□□ -0.41
SYNE1-206ENST00000367253 DAXXQ9UER7 740 aaPredicted RBP12.48□□□□□ -0.41
SYNE1-206ENST00000367253 DCAF1Q9Y4B6 1507 aa12.44□□□□□ -0.42
SYNE1-206ENST00000367253 RTL5Q5HYW3 569 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-206ENST00000367253 BCL11AQ9H165 835 aa12.41□□□□□ -0.42
SYNE1-206ENST00000367253 TRIM41Q8WV44 630 aa12.39□□□□□ -0.43
SYNE1-206ENST00000367253 PRKCSHP14314 528 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-206ENST00000367253 NACADO15069 1562 aa12.35□□□□□ -0.43
SYNE1-206ENST00000367253 TRHP20396 242 aaPredicted RBP12.35□□□□□ -0.43
SYNE1-206ENST00000367253 STAG3Q9UJ98 1225 aa12.35□□□□□ -0.43
SYNE1-206ENST00000367253 PABPN1Q86U42 306 aaKnown RBP eCLIP12.31□□□□□ -0.44
SYNE1-206ENST00000367253 PLPPR3Q6T4P5 718 aa12.3□□□□□ -0.44
SYNE1-206ENST00000367253 RB1CC1Q8TDY2 1594 aa12.3□□□□□ -0.44
SYNE1-206ENST00000367253 MYO15BQ96JP2 1530 aa12.27□□□□□ -0.45
SYNE1-206ENST00000367253 DCAF8L1A6NGE4 600 aa12.25□□□□□ -0.45
SYNE1-206ENST00000367253 NEFMP07197 916 aa12.24□□□□□ -0.45
SYNE1-206ENST00000367253 NPM2Q86SE8 214 aaKnown RBP12.23□□□□□ -0.45
SYNE1-206ENST00000367253 CDK11AQ9UQ88 783 aaPredicted RBP12.21□□□□□ -0.46
SYNE1-206ENST00000367253 FOXD1Q16676 465 aa12.2□□□□□ -0.46
SYNE1-206ENST00000367253 PODXL2Q9NZ53 605 aa12.19□□□□□ -0.46
SYNE1-206ENST00000367253 SCRIBQ14160 1630 aa12.19□□□□□ -0.46
SYNE1-206ENST00000367253 HAP1P54257 671 aaPredicted RBP12.15□□□□□ -0.46
SYNE1-206ENST00000367253 ZNF316A6NFI3 1004 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-206ENST00000367253 C14orf37Q86TY3 774 aa12.12□□□□□ -0.47
SYNE1-206ENST00000367253 CHMP7Q8WUX9 453 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-206ENST00000367253 ARID4BQ4LE39 1312 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-206ENST00000367253 ZBTB47Q9UFB7 747 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-206ENST00000367253 CLSPNQ9HAW4 1339 aa12.1□□□□□ -0.47
SYNE1-206ENST00000367253 SCAF1Q9H7N4 1312 aaKnown RBP12.09□□□□□ -0.47
SYNE1-206ENST00000367253 A0A0G2JS52 829 aa12.08□□□□□ -0.48
SYNE1-206ENST00000367253 HRCP23327 699 aa12.04□□□□□ -0.48
SYNE1-206ENST00000367253 A0A0U1RQG5 324 aaPredicted RBP12□□□□□ -0.49
SYNE1-206ENST00000367253 GTF3C3Q9Y5Q9 886 aa11.99□□□□□ -0.49
SYNE1-206ENST00000367253 CDK11BP21127 795 aaKnown RBP11.95□□□□□ -0.5
SYNE1-206ENST00000367253 AMER1Q5JTC6 1135 aaPredicted RBP11.95□□□□□ -0.5
SYNE1-206ENST00000367253 ITGAEP38570 1179 aa11.94□□□□□ -0.5
SYNE1-206ENST00000367253 TRIM52Q96A61 297 aa11.94□□□□□ -0.5
SYNE1-206ENST00000367253 CHGAP10645 457 aaKnown RBP11.94□□□□□ -0.5
SYNE1-206ENST00000367253 PPP1R15AO75807 674 aaPredicted RBP11.92□□□□□ -0.5
SYNE1-206ENST00000367253 TRIM26Q12899 539 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-206ENST00000367253 ZNF326Q5BKZ1 582 aaKnown RBP11.88□□□□□ -0.51
SYNE1-206ENST00000367253 RSF1Q96T23 1441 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-206ENST00000367253 ERCC6Q03468 1493 aa11.86□□□□□ -0.51
SYNE1-206ENST00000367253 BAZ1AQ9NRL2 1556 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-206ENST00000367253 TNNT2P45379 298 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-206ENST00000367253 ZNF777Q9ULD5 760 aaPredicted RBP11.83□□□□□ -0.52
SYNE1-206ENST00000367253 NPHP1O15259 732 aa11.82□□□□□ -0.52
SYNE1-206ENST00000367253 HDGFP51858 240 aaKnown RBP11.82□□□□□ -0.52
SYNE1-206ENST00000367253 PKNOX2Q96KN3 472 aa11.8□□□□□ -0.52
SYNE1-206ENST00000367253 FAM50AQ14320 339 aaKnown RBP11.79□□□□□ -0.52
SYNE1-206ENST00000367253 ANP32EQ9BTT0 268 aa11.78□□□□□ -0.52
SYNE1-206ENST00000367253 TULP1O00294 542 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-206ENST00000367253 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.78□□□□□ -0.52
SYNE1-206ENST00000367253 RTN4Q9NQC3 1192 aaKnown RBP11.77□□□□□ -0.53
SYNE1-206ENST00000367253 CECR2Q9BXF3 1484 aa11.77□□□□□ -0.53
SYNE1-206ENST00000367253 DIEXFQ68CQ4 756 aaKnown RBP11.76□□□□□ -0.53
SYNE1-206ENST00000367253 PHF23Q9BUL5 403 aaPredicted RBP11.76□□□□□ -0.53
SYNE1-206ENST00000367253 TMX4Q9H1E5 349 aaPredicted RBP11.72□□□□□ -0.53
SYNE1-206ENST00000367253 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.72□□□□□ -0.53
SYNE1-206ENST00000367253 TSPY4P0CV99 314 aa11.71□□□□□ -0.54
SYNE1-206ENST00000367253 TSPY10P0CW01 314 aa11.71□□□□□ -0.54
SYNE1-206ENST00000367253 PDE4CQ08493 712 aa11.71□□□□□ -0.54
SYNE1-206ENST00000367253 NCLP19338 710 aaKnown RBP11.7□□□□□ -0.54
SYNE1-206ENST00000367253 EIF4G2P78344 907 aaKnown RBP eCLIP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 422.9 ms