Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CREM-203ENST00000344351 1625 ntTSL 2 BASIC5.08□□□□□ -1.6
CX3CL1P78423 BX284613.1-201ENST00000452221 1641 ntBASIC5.08□□□□□ -1.6
CX3CL1P78423 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CX3CL1P78423 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.08□□□□□ -1.6
CX3CL1P78423 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CX3CL1P78423 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CX3CL1P78423 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.07□□□□□ -1.6
CX3CL1P78423 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 RNA5SP478-201ENST00000364657 115 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 OR13C3-201ENST00000374781 1108 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 RN7SKP129-201ENST00000410288 299 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 U3.43-201ENST00000410734 213 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 AC002127.1-201ENST00000421305 225 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC5.07□□□□□ -1.6
CX3CL1P78423 AC073508.1-201ENST00000428866 656 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 AC092601.1-201ENST00000444526 383 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC5.07□□□□□ -1.6
CX3CL1P78423 RBMY2HP-201ENST00000457961 720 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC5.07□□□□□ -1.6
CX3CL1P78423 SNRPCP11-201ENST00000492453 205 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.07□□□□□ -1.6
CX3CL1P78423 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.07□□□□□ -1.6
CX3CL1P78423 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 RNA5SP418-201ENST00000515951 117 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 COX6B1P4-201ENST00000519826 484 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CX3CL1P78423 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 AP003049.1-201ENST00000529418 457 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 OR4R2P-201ENST00000530815 597 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 RAB30-209ENST00000532548 644 ntTSL 3 BASIC5.07□□□□□ -1.6
CX3CL1P78423 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 AC124891.1-201ENST00000536322 519 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC5.07□□□□□ -1.6
CX3CL1P78423 TDGP1-201ENST00000543961 1229 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.07□□□□□ -1.6
CX3CL1P78423 AC233702.7-202ENST00000582941 211 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC5.07□□□□□ -1.6
CX3CL1P78423 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC5.07□□□□□ -1.6
CX3CL1P78423 AC073333.2-201ENST00000603589 769 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.07□□□□□ -1.6
CX3CL1P78423 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 AC009120.7-201ENST00000623452 780 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC5.07□□□□□ -1.6
CX3CL1P78423 AC007603.3-201ENST00000636915 979 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CX3CL1P78423 AC092724.1-201ENST00000624623 3397 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC5.07□□□□□ -1.6
CX3CL1P78423 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.07□□□□□ -1.6
CX3CL1P78423 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CX3CL1P78423 NCOA4P2-201ENST00000340589 1813 ntBASIC5.07□□□□□ -1.6
CX3CL1P78423 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.06□□□□□ -1.6
CX3CL1P78423 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
CX3CL1P78423 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.06□□□□□ -1.6
CX3CL1P78423 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.06□□□□□ -1.6
CX3CL1P78423 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
CX3CL1P78423 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
CX3CL1P78423 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.06□□□□□ -1.6
CX3CL1P78423 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
CX3CL1P78423 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
CX3CL1P78423 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.06□□□□□ -1.6
CX3CL1P78423 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CX3CL1P78423 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.06□□□□□ -1.6
CX3CL1P78423 RNU11-201ENST00000387069 134 ntBASIC5.06□□□□□ -1.6
CX3CL1P78423 GGA1-205ENST00000405147 575 ntTSL 4 BASIC5.06□□□□□ -1.6
CX3CL1P78423 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms