Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 OR7E156P-201ENST00000400303 464 ntBASIC5.88□□□□□ -1.47
SHMT2P34897 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
SHMT2P34897 SNORA77.2-201ENST00000408571 112 ntBASIC5.88□□□□□ -1.47
SHMT2P34897 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.88□□□□□ -1.47
SHMT2P34897 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SHMT2P34897 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.88□□□□□ -1.47
SHMT2P34897 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.88□□□□□ -1.47
SHMT2P34897 AL590399.2-201ENST00000427536 309 ntBASIC5.88□□□□□ -1.47
SHMT2P34897 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.88□□□□□ -1.47
SHMT2P34897 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SHMT2P34897 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.88□□□□□ -1.47
SHMT2P34897 AC110602.1-201ENST00000437414 318 ntBASIC5.88□□□□□ -1.47
SHMT2P34897 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.88□□□□□ -1.47
SHMT2P34897 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.88□□□□□ -1.47
SHMT2P34897 AC007956.1-201ENST00000555623 542 ntBASIC5.88□□□□□ -1.47
SHMT2P34897 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.88□□□□□ -1.47
SHMT2P34897 AC090236.2-201ENST00000587933 1101 ntBASIC5.88□□□□□ -1.47
SHMT2P34897 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.88□□□□□ -1.47
SHMT2P34897 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.88□□□□□ -1.47
SHMT2P34897 AC069234.4-201ENST00000621276 412 ntBASIC5.88□□□□□ -1.47
SHMT2P34897 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
SHMT2P34897 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.88□□□□□ -1.47
SHMT2P34897 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.88□□□□□ -1.47
SHMT2P34897 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SHMT2P34897 QRSL1P1-201ENST00000400977 1540 ntBASIC5.88□□□□□ -1.47
SHMT2P34897 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.88□□□□□ -1.47
SHMT2P34897 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SHMT2P34897 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
SHMT2P34897 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SHMT2P34897 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.88□□□□□ -1.47
SHMT2P34897 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC5.88□□□□□ -1.47
SHMT2P34897 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SHMT2P34897 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
SHMT2P34897 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
SHMT2P34897 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SHMT2P34897 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 GNL2P1-201ENST00000451274 2190 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.87□□□□□ -1.47
SHMT2P34897 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.87□□□□□ -1.47
SHMT2P34897 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.87□□□□□ -1.47
SHMT2P34897 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SHMT2P34897 OR10R3P-201ENST00000361688 942 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 RNU11-201ENST00000387069 134 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 AC004386.1-201ENST00000393214 761 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 RN7SKP240-201ENST00000410583 375 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.87□□□□□ -1.47
SHMT2P34897 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.87□□□□□ -1.47
SHMT2P34897 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 RPL5P10-201ENST00000445207 894 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 UBE2V2P4-201ENST00000447495 259 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 AC005077.1-201ENST00000449226 375 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.87□□□□□ -1.47
SHMT2P34897 CYP4F27P-201ENST00000514557 494 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 RN7SKP238-201ENST00000516483 249 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 TPM3P3-201ENST00000521343 354 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.87□□□□□ -1.47
SHMT2P34897 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.87□□□□□ -1.47
SHMT2P34897 AC005363.1-201ENST00000530779 351 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.87□□□□□ -1.47
SHMT2P34897 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.87□□□□□ -1.47
SHMT2P34897 AL360012.1-201ENST00000602813 131 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 AC027334.1-201ENST00000603257 310 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.87□□□□□ -1.47
SHMT2P34897 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 AC000095.2-202ENST00000637415 154 ntBASIC5.87□□□□□ -1.47
SHMT2P34897 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.87□□□□□ -1.47
SHMT2P34897 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.87□□□□□ -1.47
SHMT2P34897 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
SHMT2P34897 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SHMT2P34897 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHMT2P34897 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
SHMT2P34897 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHMT2P34897 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHMT2P34897 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.86□□□□□ -1.47
SHMT2P34897 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.86□□□□□ -1.47
SHMT2P34897 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SHMT2P34897 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHMT2P34897 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SHMT2P34897 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms