Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
CSB-PGBD3P0DP91 NKRF-201ENST00000304449 3269 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
CSB-PGBD3P0DP91 IAPP-205ENST00000542023 2015 ntTSL 2 BASIC9.07□□□□□ -0.96
CSB-PGBD3P0DP91 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
CSB-PGBD3P0DP91 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC9.07□□□□□ -0.96
CSB-PGBD3P0DP91 LINC00960-202ENST00000492922 2126 ntTSL 2 BASIC9.07□□□□□ -0.96
CSB-PGBD3P0DP91 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC9.07□□□□□ -0.96
CSB-PGBD3P0DP91 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 API5P1-201ENST00000424316 1510 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 HUS1-201ENST00000258774 2935 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 LINC02035-201ENST00000610128 5476 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 Y_RNA.51-201ENST00000362725 102 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 RNA5SP188-201ENST00000362916 129 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 RBBP4P4-201ENST00000398588 1289 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AL359694.1-201ENST00000403247 604 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 GLUD1P9-201ENST00000420997 1173 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AL160175.1-201ENST00000428124 247 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 UBE2D3P1-201ENST00000436669 444 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC118469.1-201ENST00000442943 488 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC092155.2-201ENST00000454675 477 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 NDUFA5P5-201ENST00000468361 342 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC090114.3-201ENST00000479267 829 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 GCSHP4-201ENST00000538792 439 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC024909.2-201ENST00000553035 286 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AL445383.1-201ENST00000554689 874 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 MIR4502-201ENST00000580432 81 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AL589743.6-201ENST00000611025 117 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 FRG1EP-201ENST00000634469 770 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 EPHA4-203ENST00000409938 3363 ntAPPRIS P1 TSL 2 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 ZMYM6-203ENST00000373333 1473 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 PTPRR-203ENST00000378778 2632 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 ZNF812P-202ENST00000536819 1890 ntTSL 2 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 FAM122C-211ENST00000623326 2064 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 CCDC62-203ENST00000392440 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 MAPK10-357ENST00000641831 2858 ntBASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
CSB-PGBD3P0DP91 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 AL359715.3-201ENST00000569267 2123 ntBASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 FAM122C-201ENST00000370784 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 PPIAP24-201ENST00000328558 471 ntBASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 GSTA12P-201ENST00000402398 508 ntBASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 NPM1P37-201ENST00000403105 874 ntBASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 CYCSP17-201ENST00000407870 315 ntBASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 RANP6-201ENST00000413691 644 ntBASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 MFSD13B-201ENST00000420133 1290 ntBASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 AC093422.3-201ENST00000428506 305 ntBASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 RPL5P2-201ENST00000429598 854 ntBASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 YWHABP1-201ENST00000445359 727 ntBASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
CSB-PGBD3P0DP91 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC9.05□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms