Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 KYNUP3-201ENST00000574386 1341 ntBASIC5.6□□□□□ -1.51
VPS13AQ96RL7 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AC104447.1-201ENST00000624214 2124 ntBASIC5.59□□□□□ -1.51
VPS13AQ96RL7 LINC01427-202ENST00000635258 4566 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 GPR161-208ENST00000537209 8256 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AL133388.1-201ENST00000404509 287 ntBASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AC019050.1-201ENST00000418508 492 ntBASIC5.59□□□□□ -1.51
VPS13AQ96RL7 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AP001521.2-201ENST00000608772 546 ntBASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AC109583.2-201ENST00000617367 129 ntBASIC5.59□□□□□ -1.51
VPS13AQ96RL7 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 RASSF2-202ENST00000379400 5427 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 LCORL-207ENST00000635767 10430 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AC011493.1-201ENST00000596753 1632 ntBASIC5.59□□□□□ -1.51
VPS13AQ96RL7 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 RNU6-941P-201ENST00000516346 108 ntBASIC5.59□□□□□ -1.51
VPS13AQ96RL7 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AC112255.1-201ENST00000624070 2493 ntBASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 AC114947.2-201ENST00000565748 2125 ntBASIC5.59□□□□□ -1.51
VPS13AQ96RL7 MED12-203ENST00000374102 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS13AQ96RL7 ZBTB21-203ENST00000398499 5806 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
VPS13AQ96RL7 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
VPS13AQ96RL7 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.59□□□□□ -1.52
VPS13AQ96RL7 AC091180.1-201ENST00000462104 372 ntBASIC5.59□□□□□ -1.52
VPS13AQ96RL7 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.59□□□□□ -1.52
VPS13AQ96RL7 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.59□□□□□ -1.52
VPS13AQ96RL7 AL353626.1-201ENST00000613429 507 ntTSL 5 BASIC5.59□□□□□ -1.52
VPS13AQ96RL7 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
VPS13AQ96RL7 CA5A-201ENST00000309893 7567 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
VPS13AQ96RL7 KIAA1217-207ENST00000396445 5706 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
VPS13AQ96RL7 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 SCN10A-201ENST00000449082 6418 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 ZNF969P-201ENST00000510345 2341 ntBASIC5.58□□□□□ -1.52
VPS13AQ96RL7 MARF1-202ENST00000540441 7105 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 SNORA62-201ENST00000365493 153 ntBASIC5.58□□□□□ -1.52
VPS13AQ96RL7 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 DSTNP5-201ENST00000427921 523 ntBASIC5.58□□□□□ -1.52
VPS13AQ96RL7 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 SAMM50P1-201ENST00000455403 1399 ntBASIC5.58□□□□□ -1.52
VPS13AQ96RL7 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 SCAF11-202ENST00000369367 7543 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 SORBS1-210ENST00000371246 6931 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 SPTBN1-207ENST00000615901 10226 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 RNU1-43P-201ENST00000365052 165 ntBASIC5.58□□□□□ -1.52
VPS13AQ96RL7 AC004690.1-201ENST00000418216 328 ntBASIC5.58□□□□□ -1.52
VPS13AQ96RL7 RPS27AP7-201ENST00000422792 455 ntBASIC5.58□□□□□ -1.52
VPS13AQ96RL7 AC245028.1-201ENST00000423259 256 ntBASIC5.58□□□□□ -1.52
VPS13AQ96RL7 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 AC025574.2-201ENST00000615621 514 ntBASIC5.58□□□□□ -1.52
VPS13AQ96RL7 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS13AQ96RL7 ATP5G3-201ENST00000284727 5484 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms